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Gene Expression Data
Assay Details
Assay
Reference: J:171106 Suzuki-Hirano A, et al., Dynamic spatiotemporal gene expression in embryonic mouse thalamus. J Comp Neurol. 2011 Feb 15;519(3):528-43
Assay type: RNA in situ
MGI Accession ID: MGI:5294438
Gene symbol: Shh
Gene name: sonic hedgehog
Probe: MGC clone 69975
Probe preparation: Antisense labelled with fluorescein RNA
Visualized with: Alkaline phosphatase
Results
Specimen 3B: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Barhl2 (assay MGI:5294439).
Structure Level Pattern Image Note
TS20: hypothalamus Present 3B
Specimen 3C: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Barhl2 (assay MGI:5294439).
Structure Level Pattern Image Note
TS20: ganglionic eminence Present 3C
Specimen 3D: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Barhl2 (assay MGI:5294439).
Structure Level Pattern Image Note
TS20: hypothalamus Present 3D
Specimen 3E: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Barhl2 (assay MGI:5294439).
Structure Level Pattern Image Note
TS20: hypothalamus Present 3E
Specimen 3F: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Barhl2 (assay MGI:5294439).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3F
Specimen 3G: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Ddc (assay MGI:5294440).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3G
Specimen 3H: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Ddc (assay MGI:5294440).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3H
Specimen 3I: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Ddc (assay MGI:5294440).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3I
Specimen 3J: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Ddc (assay MGI:5294440).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3J
Specimen 3K: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Ddc (assay MGI:5294440).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3K
Specimen 3L: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Drd2 (assay MGI:5294441).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3L
Specimen 3M: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Drd2 (assay MGI:5294441).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3M
Specimen 3N: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Drd2 (assay MGI:5294441).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3N
Specimen 3O: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Drd2 (assay MGI:5294441).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3O
Specimen 3P: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Drd2 (assay MGI:5294441).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 3P
Specimen 4A: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Grm1 (assay MGI:5294599).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4A
Specimen 4B: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Grm1 (assay MGI:5294599).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4B
Specimen 4C: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Grm1 (assay MGI:5294599).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4C
Specimen 4D: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Grm1 (assay MGI:5294599).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4D
Specimen 4E: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Grm1 (assay MGI:5294599).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4E
Specimen 4F: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxp2 (assay MGI:5294600).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4F
Specimen 4G: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxp2 (assay MGI:5294600).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4G
Specimen 4H: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxp2 (assay MGI:5294600).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4H
Specimen 4I: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxp2 (assay MGI:5294600).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4I
Specimen 4J: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Foxp2 (assay MGI:5294600).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4J
Specimen 4K: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Kitl (assay MGI:5294602).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4K
Specimen 4L: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Kitl (assay MGI:5294602).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4L
Specimen 4M: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Kitl (assay MGI:5294602).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4M
Specimen 4N: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Kitl (assay MGI:5294602).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4N
Specimen 4O: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Kitl (assay MGI:5294602).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 4O
Specimen 5A: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Slitrk6 (assay MGI:5294797).
Structure Level Pattern Image Note
TS20: diencephalon Present 5A
Specimen 5B: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Slitrk6 (assay MGI:5294797).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5B
Specimen 5C: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Slitrk6 (assay MGI:5294797).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5C
Specimen 5D: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Slitrk6 (assay MGI:5294797).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5D
Specimen 5E: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Slitrk6 (assay MGI:5294797).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5E
Specimen 5F: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Chst2 (assay MGI:5294799).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5F
Specimen 5G: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Chst2 (assay MGI:5294799).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5G
Specimen 5H: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Chst2 (assay MGI:5294799).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5H
Specimen 5I: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Chst2 (assay MGI:5294799).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5I
Specimen 5J: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Chst2 (assay MGI:5294799).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5J
Specimen 5K: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Shox2 (assay MGI:5294800).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5K
Specimen 5L: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Shox2 (assay MGI:5294800).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5L
Specimen 5M: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Shox2 (assay MGI:5294800).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5M
Specimen 5N: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Shox2 (assay MGI:5294800).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5N
Specimen 5O: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Shox2 (assay MGI:5294800).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 5O
Specimen 6A: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gria1 (assay MGI:5294801).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6A
Specimen 6B: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gria1 (assay MGI:5294801).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6B
Specimen 6C: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gria1 (assay MGI:5294801).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6C
Specimen 6D: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gria1 (assay MGI:5294801).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6D
Specimen 6E: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Gria1 (assay MGI:5294801).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6E
Specimen 6F: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Bmp7 (assay MGI:5294802).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6F
Specimen 6G: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Bmp7 (assay MGI:5294802).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6G
Specimen 6H: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Bmp7 (assay MGI:5294802).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6H
Specimen 6I: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Bmp7 (assay MGI:5294802).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6I
Specimen 6J: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Bmp7 (assay MGI:5294802).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6J
Specimen 6K: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Cdkn1c (assay MGI:5294803).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6K
Specimen 6L: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Cdkn1c (assay MGI:5294803).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6L
Specimen 6M: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Cdkn1c (assay MGI:5294803).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6M
Specimen 6N: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Cdkn1c (assay MGI:5294803).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6N
Specimen 6O: embryonic day 12.5 (more )
Note: Double labeled: brown - Shh; blue - Cdkn1c (assay MGI:5294803).
Structure Level Pattern Image Note
TS20: zona limitans intrathalamica Present 6O
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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04/23/2024
MGI 6.23 		The Jackson Laboratory