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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4825310
Gene symbol: H2-T9
Gene name: histocompatibility 2, T region locus 9
Probe: MGC clone 49483
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. The probe used in this assay may also recognize other genes (see Assays MGI:5296626 and MGI:5296627).
Results
Specimen euxassay_003019_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_01
Specimen euxassay_003019_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_02
Specimen euxassay_003019_03: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_03 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_03
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_03
Specimen euxassay_003019_04: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_04 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_04
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_04
Specimen euxassay_003019_05: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_05 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_05
TS23: left lung Strong Regionally restricted euxassay_003019_05
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_05
Specimen euxassay_003019_06: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_06 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_06
TS23: midgut loop Strong Regionally restricted euxassay_003019_06 smooth muscle
TS23: left lung Strong Regionally restricted euxassay_003019_06
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_06
Specimen euxassay_003019_07: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_07 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_07
TS23: midgut loop Strong Regionally restricted euxassay_003019_07 smooth muscle
TS23: left lung Strong Regionally restricted euxassay_003019_07
TS23: urinary system Strong Single cells euxassay_003019_07
TS23: mesonephros Present euxassay_003019_07
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_07
Specimen euxassay_003019_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_08 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_08
TS23: midgut loop Strong Regionally restricted euxassay_003019_08 smooth muscle
TS23: left lung Strong Regionally restricted euxassay_003019_08
TS23: urinary system Strong Single cells euxassay_003019_08
TS23: mesonephros Present euxassay_003019_08
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_08
Specimen euxassay_003019_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut loop Strong Regionally restricted euxassay_003019_09 smooth muscle
TS23: stomach Strong Regionally restricted euxassay_003019_09 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_09
TS23: left lung Strong Regionally restricted euxassay_003019_09
TS23: renal calyx Moderate Regionally restricted euxassay_003019_09
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_09
Specimen euxassay_003019_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_10 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_10
TS23: midgut loop Strong Regionally restricted euxassay_003019_10 smooth muscle
TS23: left lung Strong Regionally restricted euxassay_003019_10
TS23: renal calyx Moderate Regionally restricted euxassay_003019_10
TS23: aorta Strong Regionally restricted euxassay_003019_10
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_10
Specimen euxassay_003019_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: stomach Strong Regionally restricted euxassay_003019_11 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_11
TS23: midgut loop Strong Regionally restricted euxassay_003019_11 smooth muscle
TS23: left lung Strong Regionally restricted euxassay_003019_11
TS23: renal calyx Moderate Regionally restricted euxassay_003019_11
TS23: tongue Moderate Regionally restricted euxassay_003019_11
TS23: aorta Strong Regionally restricted euxassay_003019_11
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_11
Specimen euxassay_003019_12: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut loop Strong Regionally restricted euxassay_003019_12 smooth muscle
TS23: stomach Strong Regionally restricted euxassay_003019_12 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_12
TS23: left lung Strong Regionally restricted euxassay_003019_12
TS23: renal calyx Moderate Regionally restricted euxassay_003019_12
TS23: tongue Weak Regionally restricted euxassay_003019_12
TS23: aorta Strong Regionally restricted euxassay_003019_12
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_12
Specimen euxassay_003019_13: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut loop Strong Regionally restricted euxassay_003019_13 smooth muscle
TS23: midgut Strong Regionally restricted euxassay_003019_13 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_13
TS23: left lung Strong Regionally restricted euxassay_003019_13
TS23: tongue Moderate Regionally restricted euxassay_003019_13
TS23: esophagus Strong Regionally restricted euxassay_003019_13
TS23: bladder wall Moderate Regionally restricted euxassay_003019_13
TS23: aorta Strong Regionally restricted euxassay_003019_13
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_13
Specimen euxassay_003019_14: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: rectum Strong Regionally restricted euxassay_003019_14 smooth muscle
TS23: hindgut Strong Regionally restricted euxassay_003019_14 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_14
TS23: midgut loop Strong Regionally restricted euxassay_003019_14 smooth muscle
TS23: midgut Strong Regionally restricted euxassay_003019_14 smooth muscle
TS23: left lung Strong Regionally restricted euxassay_003019_14
TS23: tongue Moderate Regionally restricted euxassay_003019_14
TS23: esophagus Strong Regionally restricted euxassay_003019_14
TS23: bladder wall Moderate Regionally restricted euxassay_003019_14
TS23: aorta Strong Regionally restricted euxassay_003019_14
TS23: sacral vertebral cartilage condensation Moderate Regionally restricted euxassay_003019_14
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_003019_14
Specimen euxassay_003019_15: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut loop Strong Regionally restricted euxassay_003019_15 smooth muscle
TS23: midgut Strong Regionally restricted euxassay_003019_15 smooth muscle
TS23: rectum Strong Regionally restricted euxassay_003019_15 smooth muscle
TS23: hindgut Strong Regionally restricted euxassay_003019_15 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_15
TS23: right lung Strong Regionally restricted euxassay_003019_15
TS23: tongue Moderate Regionally restricted euxassay_003019_15
TS23: esophagus Strong Regionally restricted euxassay_003019_15
TS23: bladder wall Strong Regionally restricted euxassay_003019_15
TS23: aorta Strong Regionally restricted euxassay_003019_15
TS23: sacral vertebral cartilage condensation Weak Regionally restricted euxassay_003019_15
Specimen euxassay_003019_16: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut loop Strong Regionally restricted euxassay_003019_16 smooth muscle
TS23: rectum Strong Regionally restricted euxassay_003019_16 smooth muscle
TS23: hindgut Strong Regionally restricted euxassay_003019_16 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_16
TS23: midgut Strong Regionally restricted euxassay_003019_16 smooth muscle
TS23: right lung Strong Regionally restricted euxassay_003019_16
TS23: tongue Weak Regionally restricted euxassay_003019_16
TS23: esophagus Strong Regionally restricted euxassay_003019_16
TS23: bladder wall Strong Regionally restricted euxassay_003019_16
TS23: aorta Strong Regionally restricted euxassay_003019_16
TS23: sacral vertebral cartilage condensation Moderate Regionally restricted euxassay_003019_16
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_003019_16
Specimen euxassay_003019_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: hindgut Strong Regionally restricted euxassay_003019_17 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_17
TS23: midgut Strong Regionally restricted euxassay_003019_17 smooth muscle
TS23: midgut loop Strong Regionally restricted euxassay_003019_17 smooth muscle
TS23: right lung Strong Regionally restricted euxassay_003019_17
TS23: tongue Weak Regionally restricted euxassay_003019_17
TS23: esophagus Strong Regionally restricted euxassay_003019_17
TS23: bladder wall Strong Regionally restricted euxassay_003019_17
TS23: aorta Strong Regionally restricted euxassay_003019_17
TS23: axial skeleton Moderate Regionally restricted euxassay_003019_17
TS23: lumbar intervertebral disc Moderate Regionally restricted euxassay_003019_17
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_17
Specimen euxassay_003019_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_003019_18 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_18
TS23: midgut loop Strong Regionally restricted euxassay_003019_18 smooth muscle
TS23: right lung Strong Regionally restricted euxassay_003019_18
TS23: renal calyx Moderate Regionally restricted euxassay_003019_18
TS23: tongue Weak Regionally restricted euxassay_003019_18
TS23: aorta Strong Regionally restricted euxassay_003019_18
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_18
Specimen euxassay_003019_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_003019_19 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_19
TS23: right lung Strong Regionally restricted euxassay_003019_19
TS23: renal calyx Moderate Regionally restricted euxassay_003019_19
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_19
Specimen euxassay_003019_20: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_003019_20 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_20
TS23: right lung Strong Regionally restricted euxassay_003019_20
TS23: renal calyx Moderate Regionally restricted euxassay_003019_20
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_20
Specimen euxassay_003019_21: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_003019_21 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_21
TS23: right lung Strong Regionally restricted euxassay_003019_21
TS23: renal calyx Moderate Regionally restricted euxassay_003019_21
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_21
Specimen euxassay_003019_22: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: midgut Strong Regionally restricted euxassay_003019_22 smooth muscle
TS23: smooth muscle tissue Present euxassay_003019_22
TS23: right lung Strong Regionally restricted euxassay_003019_22
TS23: renal calyx Weak Regionally restricted euxassay_003019_22
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_22
Specimen euxassay_003019_23: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: right lung Strong Regionally restricted euxassay_003019_23
TS23: urinary system Strong Single cells euxassay_003019_23
TS23: mesonephros Present euxassay_003019_23
TS23: vertebral axis musculature Weak Regionally restricted euxassay_003019_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/25/2025
MGI 6.24 		The Jackson Laboratory