rs31528793 SNP Detail

Summary

• ID
  rs31528793
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67371315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCC TGGGGTAGGC GGGCACCTCC
  S
  GGAGAAAAGC TCGGGCATTC CCTCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45543628	mCV23634266	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss135257800	ENSMUSSNP1681744	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs31528793					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67371315 () rs orientation: forward

Symbol	Name	Function Class
Gfm1	G elongation factor, mitochondrial 1	Intron
Lxn	latexin	75 bp upstream
Rr577924	regulatory region 577924	1649 bp distal
Rr577925	regulatory region 577925	67 bp distal
Rr577926	regulatory region 577926	423 bp distal
Rr577927	regulatory region 577927	within coordinates
Tssr33497	transcription start site region 33497	355 bp upstream
Tssr33498	transcription start site region 33498	191 bp upstream
Tssr33499	transcription start site region 33499	157 bp upstream
Tssr33500	transcription start site region 33500	39 bp upstream
Tssr33501	transcription start site region 33501	152 bp downstream