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rs31528793 SNP Detail
Summary
  • ID
    rs31528793 dbSNP
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:67463982 (GRCm38)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CGCCC TGGGGTAGGC GGGCACCTCC
    S
    GGAGAAAAGC TCGGGCATTC CCTCC                                      
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss45543628 mCV23634266 ABI CRAMUS_MOUSE f SNP G G C
ss135257800 ENSMUSSNP1681744 ENSEMBL ENSEMBL_Sanger f SNP G G C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs31528793 SNP G G C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:67463982 (GRCm38) rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13246 CpG island 13246 within coordinates
Gfm1 G elongation factor, mitochondrial 1 NM_138591
MGI Seq Detail
Intron
Lxn latexin NM_016753
MGI Seq Detail
Locus-Region (upstream)
Tssr33497 transcription start site region 33497 355 bp upstream
Tssr33498 transcription start site region 33498 191 bp upstream
Tssr33499 transcription start site region 33499 157 bp upstream
Tssr33500 transcription start site region 33500 39 bp upstream
Tssr33501 transcription start site region 33501 152 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory