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rs29711463 SNP Detail
Summary
  • ID
    rs29711463 dbSNP
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:10329962 (GRCm38)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CAAGTGACTT GACAGCTTTC TGCTGACCTC TCCAGACTCA
    CCCCAGGCTT GACCGCACTA ACACTAACGT GGGCCCCTAG CCCAGGGAAG CATGGAAGTG
    S
    TCATGCCCAG GAAAGGTGGC CGCTCTGCCT GCTTCCCAGG ACAAGTCACA CCCTGTGCTT
    CCCCTGTAAG AGCGTCAGGT ACACGGAGAA GCGCAGGGA                       
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss45513705 mCV25008381 ABI CRAMUS_MOUSE f SNP C C C G
ss49558670 NES12890670 PERLEGEN MM_PANEL2 f SNP C C C C C C G G C C G C C G G
ss134581313 ENSMUSSNP2304926 ENSEMBL ENSEMBL_Sanger f SNP C C G
ss320653514 CHEV_3_10329962 CHEVERUD SCREENING_POP f SNP C G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs29711463 SNP C C C C C C C C G G C C C G C C G G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:10329962 (GRCm38) rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12981 CpG island 12981 1021 bp proximal
Gm38303 predicted gene, 38303 within coordinates
Impa1 inositol (myo)-1(or 4)-monophosphatase 1 NM_018864
MGI Seq Detail
Intron
XM_006530077
MGI Seq Detail
Intron
XM_006530078
MGI Seq Detail
Intron
XM_006530079
MGI Seq Detail
Intron
Slc10a5 solute carrier family 10 (sodium/bile acid cotransporter family), member 5 1772 bp downstream
Tssr32612 transcription start site region 32612 1322 bp downstream
Tssr32613 transcription start site region 32613 1396 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/09/2018
MGI 6.12
The Jackson Laboratory