rs29587452 SNP Detail

Summary

• ID
  rs29587452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:31744822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTGCC AAAAAAAAAA
  AAAAAGAGGG AAATGTTGTT GGGTTTTTGT AATTAAATTA TTTATATATT TTTGAAACCT
  GAATTGAAAT GTTGCAGGCA ACGGCTACAG CTTTATTAGT GGTTACCTAA CTGTGGTCTT
  CTTGGGCCAA GCAATTTCTT TAAAGGAAAA GTTAGCATTA TGTTTGTGGG GTGCCAGGGC
  Y
  GCCACCACGA GAAACCGTGT GATTTTTATT TTAATATTAT TTGTGTCTGT GTATATATTT
  GTATATAAAT TTTATGAACC CCAGGCATAC TGCTTGTTTT TTTAAAAAAA AATAAAACTC
  AAAATTGATC TACAAAACAC TTTGTGATAG TAGATTGGGG TAGATATTTT TACCACTCCC
  CCACCCCAAA AAAAATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39098962	mCV23255556	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148841341	ENSMUSSNP4569524	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29587452					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:31744822 () rs orientation: forward

Symbol	Name	Function Class
A530084C06Rik	RIKEN cDNA A530084C06 gene	1506 bp upstream
Foxq1	forkhead box Q1	mRNA-UTR
Rr476751	regulatory region 476751	1372 bp distal
Rr476752	regulatory region 476752	972 bp distal
Rr476753	regulatory region 476753	1417 bp proximal