rs29587452 SNP Detail

Summary

• ID
  rs29587452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:31744822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGTGCC AAAAAAAAAA
  AAAAAGAGGG AAATGTTGTT GGGTTTTTGT AATTAAATTA TTTATATATT TTTGAAACCT
  GAATTGAAAT GTTGCAGGCA ACGGCTACAG CTTTATTAGT GGTTACCTAA CTGTGGTCTT
  CTTGGGCCAA GCAATTTCTT TAAAGGAAAA GTTAGCATTA TGTTTGTGGG GTGCCAGGGC
  Y
  GCCACCACGA GAAACCGTGT GATTTTTATT TTAATATTAT TTGTGTCTGT GTATATATTT
  GTATATAAAT TTTATGAACC CCAGGCATAC TGCTTGTTTT TTTAAAAAAA AATAAAACTC
  AAAATTGATC TACAAAACAC TTTGTGATAG TAGATTGGGG TAGATATTTT TACCACTCCC
  CCACCCCAAA AAAAATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39098962	mCV23255556	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148841341	ENSMUSSNP4569524	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29587452					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:31744822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5413	CpG island 5413	618 bp distal
Foxq1	forkhead box Q1	within coordinates
Rr271322	regulatory region 271322	979 bp proximal
Rr281186	regulatory region 281186	within coordinates