AAGTGAGTTC CAGGACAGCC AGGGCTACAC AGAGAAACCC TGTCTCAAAA AACAAAACCA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAC AAAACCAAAA AAAAGTATCG CTATTTTAAT TCAGAGAAAA TAAGCCAATT AACTGAGATC ACATGGTCAG GCACAGAGAG TCTGACCAAT ACTTGCTCCA GACTTGCTGT R CACTCTGCCT AGGACTCTGT AGAGGAATAC AGGATGGGGA ACCCTCAGAA GTTGCCCAGC TAGTGAAAGA TAAACACAGG AAAGAAATAC CTAGACAAAT CTAAGGTTTG AAATGCAAGT TTAGGAATTT TTTTTCTTTT TAATCAAAAA GAAAGTTAGG CGATAAACCT AGGATCTGGC TGTGAGAATG ATGTTTTTCC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37281978 | NES08547417 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | G | A | A | G | A | ||
ss323833355 | CHEV_11_101383121 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs28257452 | SNP | A | A | A | A | A | A | G | A | A | A | G | G | A | A | G | A | A |
Location: Chr11:101521807 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Brca1 | breast cancer 1, early onset | NM_009764 MGI Seq Detail |
Intron | |||||
XM_006532064 MGI Seq Detail |
Intron | |||||||
XM_006532065 MGI Seq Detail |
Intron | |||||||
XM_006532067 MGI Seq Detail |
Intron | |||||||
XM_006532068 MGI Seq Detail |
Intron |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO) |
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last database update 06/23/2022 MGI 6.20 |
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