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rs28257452 SNP Detail
Summary
  • ID
    rs28257452 dbSNP
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:101521807 (GRCm38)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGTGAGTTC CAGGACAGCC
    AGGGCTACAC AGAGAAACCC TGTCTCAAAA AACAAAACCA AAAAAAAAAA AAAAAAAAAA
    AAAAAAAAAC AAAACCAAAA AAAAGTATCG CTATTTTAAT TCAGAGAAAA TAAGCCAATT
    AACTGAGATC ACATGGTCAG GCACAGAGAG TCTGACCAAT ACTTGCTCCA GACTTGCTGT
    R
    CACTCTGCCT AGGACTCTGT AGAGGAATAC AGGATGGGGA ACCCTCAGAA GTTGCCCAGC
    TAGTGAAAGA TAAACACAGG AAAGAAATAC CTAGACAAAT CTAAGGTTTG AAATGCAAGT
    TTAGGAATTT TTTTTCTTTT TAATCAAAAA GAAAGTTAGG CGATAAACCT AGGATCTGGC
    TGTGAGAATG ATGTTTTTCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37281978 NES08547417 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A G A A G A
ss323833355 CHEV_11_101383121 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs28257452 SNP A A A A A A G A A A G G A A G A A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:101521807 (GRCm38) rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Brca1 breast cancer 1, early onset NM_009764
MGI Seq Detail
Intron
XM_006532064
MGI Seq Detail
Intron
XM_006532065
MGI Seq Detail
Intron
XM_006532067
MGI Seq Detail
Intron
XM_006532068
MGI Seq Detail
Intron

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/12/2017
MGI 6.10
The Jackson Laboratory