rs28257452 SNP Detail

Genome Coordinate Discrepancy
The genome coordinates for mouse SNPS shown in the results are from GRCm38. The genome coordinates for mouse genes are from the most recent mouse genome reference assembly (GRCm39). Mouse SNP coordinates will be updated after they have been updated to GRCm39 by the European Variation Archive (EVA) (see details).

Summary

• ID
  rs28257452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137

Genome Location and Flanking Sequence

• Location
  Chr11:101521807 (GRCm38)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAGTTC CAGGACAGCC
  AGGGCTACAC AGAGAAACCC TGTCTCAAAA AACAAAACCA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAC AAAACCAAAA AAAAGTATCG CTATTTTAAT TCAGAGAAAA TAAGCCAATT
  AACTGAGATC ACATGGTCAG GCACAGAGAG TCTGACCAAT ACTTGCTCCA GACTTGCTGT
  R
  CACTCTGCCT AGGACTCTGT AGAGGAATAC AGGATGGGGA ACCCTCAGAA GTTGCCCAGC
  TAGTGAAAGA TAAACACAGG AAAGAAATAC CTAGACAAAT CTAAGGTTTG AAATGCAAGT
  TTAGGAATTT TTTTTCTTTT TAATCAAAAA GAAAGTTAGG CGATAAACCT AGGATCTGGC
  TGTGAGAATG ATGTTTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37281978	NES08547417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323833355	CHEV_11_101383121	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28257452					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101521807 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Brca1	breast cancer 1, early onset	NM_009764 MGI Seq Detail		Intron
		XM_006532064 MGI Seq Detail		Intron
		XM_006532065 MGI Seq Detail		Intron
		XM_006532067 MGI Seq Detail		Intron
		XM_006532068 MGI Seq Detail		Intron