rs28257452 SNP Detail

Summary

• ID
  rs28257452 dbSNP
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  MPD | Mouse Genome Browser | Ensembl SNPView | UCSC Browser | NCBI MapViewer
  

Genome Location and Flanking Sequence

• Location
  Chr11:101521807 (GRCm38)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGAGTTC CAGGACAGCC
  AGGGCTACAC AGAGAAACCC TGTCTCAAAA AACAAAACCA AAAAAAAAAA AAAAAAAAAA
  AAAAAAAAAC AAAACCAAAA AAAAGTATCG CTATTTTAAT TCAGAGAAAA TAAGCCAATT
  AACTGAGATC ACATGGTCAG GCACAGAGAG TCTGACCAAT ACTTGCTCCA GACTTGCTGT
  R
  CACTCTGCCT AGGACTCTGT AGAGGAATAC AGGATGGGGA ACCCTCAGAA GTTGCCCAGC
  TAGTGAAAGA TAAACACAGG AAAGAAATAC CTAGACAAAT CTAAGGTTTG AAATGCAAGT
  TTAGGAATTT TTTTTCTTTT TAATCAAAAA GAAAGTTAGG CGATAAACCT AGGATCTGGC
  TGTGAGAATG ATGTTTTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37281978	NES08547417	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323833355	CHEV_11_101383121	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28257452					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101521807 (GRCm38) rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Brca1	breast cancer 1, early onset	NM_009764 MGI Seq Detail		Intron
		XM_006532064 MGI Seq Detail		Intron
		XM_006532065 MGI Seq Detail		Intron
		XM_006532067 MGI Seq Detail		Intron
		XM_006532068 MGI Seq Detail		Intron