Gene_Ontology
        biological_process
                biological regulation
                        regulation of biological process
                                regulation of cellular process
                                        regulation of cellular metabolic process
                                                regulation of cellular protein metabolic process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                biological regulation
                        regulation of biological process
                                regulation of cellular process
                                        regulation of cellular metabolic process
                                                regulation of phosphorus metabolic process
                                                        regulation of phosphate metabolic process
                                                                regulation of phosphorylation
                                                                        negative regulation of phosphorylation +
                                                                        positive regulation of phosphorylation +
                                                                        regulation of kinase activity +
                                                                        regulation of oxidative phosphorylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                biological regulation
                        regulation of biological process
                                regulation of metabolic process
                                        regulation of cellular metabolic process
                                                regulation of cellular protein metabolic process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                biological regulation
                        regulation of biological process
                                regulation of metabolic process
                                        regulation of cellular metabolic process
                                                regulation of phosphorus metabolic process
                                                        regulation of phosphate metabolic process
                                                                regulation of phosphorylation
                                                                        negative regulation of phosphorylation +
                                                                        positive regulation of phosphorylation +
                                                                        regulation of kinase activity +
                                                                        regulation of oxidative phosphorylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                biological regulation
                        regulation of biological process
                                regulation of metabolic process
                                        regulation of macromolecule metabolic process
                                                regulation of protein metabolic process
                                                        regulation of cellular protein metabolic process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                biological regulation
                        regulation of biological process
                                regulation of metabolic process
                                        regulation of primary metabolic process
                                                regulation of protein metabolic process
                                                        regulation of cellular protein metabolic process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                cellular macromolecule metabolic process
                                        cellular protein metabolic process
                                                cellular protein modification process
                                                        protein phosphorylation
                                                                actin phosphorylation +
                                                                common-partner SMAD protein phosphorylation
                                                                DNA damage induced protein phosphorylation
                                                                histone phosphorylation +
                                                                I-kappaB phosphorylation
                                                                inhibitory G-protein coupled receptor phosphorylation
                                                                JUN phosphorylation
                                                                negative regulation of protein phosphorylation +
                                                                pathway-restricted SMAD protein phosphorylation +
                                                                peptidyl-arginine phosphorylation
                                                                peptidyl-aspartic acid phosphorylation +
                                                                peptidyl-cysteine phosphorylation +
                                                                peptidyl-histidine phosphorylation +
                                                                peptidyl-serine phosphorylation +
                                                                peptidyl-threonine phosphorylation +
                                                                peptidyl-tyrosine phosphorylation +
                                                                phosphorylation of RNA polymerase II C-terminal domain +
                                                                positive regulation of protein phosphorylation +
                                                                protein autophosphorylation +
                                                                protein phosphorylation involved in cellular protein catabolic process
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                cellular macromolecule metabolic process
                                        cellular protein metabolic process
                                                cellular protein modification process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                cellular macromolecule metabolic process
                                        cellular protein metabolic process
                                                regulation of cellular protein metabolic process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                phosphorus metabolic process
                                        phosphate-containing compound metabolic process
                                                phosphorylation
                                                        protein phosphorylation
                                                                actin phosphorylation +
                                                                common-partner SMAD protein phosphorylation
                                                                DNA damage induced protein phosphorylation
                                                                histone phosphorylation +
                                                                I-kappaB phosphorylation
                                                                inhibitory G-protein coupled receptor phosphorylation
                                                                JUN phosphorylation
                                                                negative regulation of protein phosphorylation +
                                                                pathway-restricted SMAD protein phosphorylation +
                                                                peptidyl-arginine phosphorylation
                                                                peptidyl-aspartic acid phosphorylation +
                                                                peptidyl-cysteine phosphorylation +
                                                                peptidyl-histidine phosphorylation +
                                                                peptidyl-serine phosphorylation +
                                                                peptidyl-threonine phosphorylation +
                                                                peptidyl-tyrosine phosphorylation +
                                                                phosphorylation of RNA polymerase II C-terminal domain +
                                                                positive regulation of protein phosphorylation +
                                                                protein autophosphorylation +
                                                                protein phosphorylation involved in cellular protein catabolic process
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                phosphorus metabolic process
                                        phosphate-containing compound metabolic process
                                                phosphorylation
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                phosphorus metabolic process
                                        phosphate-containing compound metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                phosphorus metabolic process
                                        regulation of phosphorus metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                regulation of cellular metabolic process
                                        regulation of cellular protein metabolic process
                                                regulation of protein modification process
                                                        negative regulation of protein modification process +
                                                        positive regulation of protein modification process +
                                                        regulation of histone modification +
                                                        regulation of N-terminal protein palmitoylation +
                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                        regulation of post-translational protein modification +
                                                        regulation of protein acetylation +
                                                        regulation of protein adenylylation +
                                                        regulation of protein deacetylation +
                                                        regulation of protein deneddylation +
                                                        regulation of protein dephosphorylation +
                                                        regulation of protein desumoylation +
                                                        regulation of protein deubiquitination +
                                                        regulation of protein geranylgeranylation +
                                                        regulation of protein glutathionylation +
                                                        regulation of protein glycosylation +
                                                        regulation of protein neddylation +
                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                negative regulation of protein phosphorylation +
                                                                positive regulation of protein phosphorylation +
                                                                regulation of actin phosphorylation
                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                regulation of histone phosphorylation +
                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                regulation of peptidyl-serine phosphorylation +
                                                                regulation of peptidyl-threonine phosphorylation +
                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                regulation of protein autophosphorylation +
                                                                regulation of protein kinase activity +
                                                        regulation of protein sumoylation +
                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                cellular process
                        cellular metabolic process
                                regulation of cellular metabolic process
                                        regulation of phosphorus metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                cellular process
                        regulation of cellular process
                                regulation of cellular metabolic process
                                        regulation of cellular protein metabolic process
                                                regulation of protein modification process
                                                        negative regulation of protein modification process +
                                                        positive regulation of protein modification process +
                                                        regulation of histone modification +
                                                        regulation of N-terminal protein palmitoylation +
                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                        regulation of post-translational protein modification +
                                                        regulation of protein acetylation +
                                                        regulation of protein adenylylation +
                                                        regulation of protein deacetylation +
                                                        regulation of protein deneddylation +
                                                        regulation of protein dephosphorylation +
                                                        regulation of protein desumoylation +
                                                        regulation of protein deubiquitination +
                                                        regulation of protein geranylgeranylation +
                                                        regulation of protein glutathionylation +
                                                        regulation of protein glycosylation +
                                                        regulation of protein neddylation +
                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                negative regulation of protein phosphorylation +
                                                                positive regulation of protein phosphorylation +
                                                                regulation of actin phosphorylation
                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                regulation of histone phosphorylation +
                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                regulation of peptidyl-serine phosphorylation +
                                                                regulation of peptidyl-threonine phosphorylation +
                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                regulation of protein autophosphorylation +
                                                                regulation of protein kinase activity +
                                                        regulation of protein sumoylation +
                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                cellular process
                        regulation of cellular process
                                regulation of cellular metabolic process
                                        regulation of phosphorus metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                cellular macromolecule metabolic process
                                        cellular protein metabolic process
                                                cellular protein modification process
                                                        protein phosphorylation
                                                                actin phosphorylation +
                                                                common-partner SMAD protein phosphorylation
                                                                DNA damage induced protein phosphorylation
                                                                histone phosphorylation +
                                                                I-kappaB phosphorylation
                                                                inhibitory G-protein coupled receptor phosphorylation
                                                                JUN phosphorylation
                                                                negative regulation of protein phosphorylation +
                                                                pathway-restricted SMAD protein phosphorylation +
                                                                peptidyl-arginine phosphorylation
                                                                peptidyl-aspartic acid phosphorylation +
                                                                peptidyl-cysteine phosphorylation +
                                                                peptidyl-histidine phosphorylation +
                                                                peptidyl-serine phosphorylation +
                                                                peptidyl-threonine phosphorylation +
                                                                peptidyl-tyrosine phosphorylation +
                                                                phosphorylation of RNA polymerase II C-terminal domain +
                                                                positive regulation of protein phosphorylation +
                                                                protein autophosphorylation +
                                                                protein phosphorylation involved in cellular protein catabolic process
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                cellular macromolecule metabolic process
                                        cellular protein metabolic process
                                                cellular protein modification process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                cellular macromolecule metabolic process
                                        cellular protein metabolic process
                                                regulation of cellular protein metabolic process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                phosphorus metabolic process
                                        phosphate-containing compound metabolic process
                                                phosphorylation
                                                        protein phosphorylation
                                                                actin phosphorylation +
                                                                common-partner SMAD protein phosphorylation
                                                                DNA damage induced protein phosphorylation
                                                                histone phosphorylation +
                                                                I-kappaB phosphorylation
                                                                inhibitory G-protein coupled receptor phosphorylation
                                                                JUN phosphorylation
                                                                negative regulation of protein phosphorylation +
                                                                pathway-restricted SMAD protein phosphorylation +
                                                                peptidyl-arginine phosphorylation
                                                                peptidyl-aspartic acid phosphorylation +
                                                                peptidyl-cysteine phosphorylation +
                                                                peptidyl-histidine phosphorylation +
                                                                peptidyl-serine phosphorylation +
                                                                peptidyl-threonine phosphorylation +
                                                                peptidyl-tyrosine phosphorylation +
                                                                phosphorylation of RNA polymerase II C-terminal domain +
                                                                positive regulation of protein phosphorylation +
                                                                protein autophosphorylation +
                                                                protein phosphorylation involved in cellular protein catabolic process
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                phosphorus metabolic process
                                        phosphate-containing compound metabolic process
                                                phosphorylation
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                phosphorus metabolic process
                                        phosphate-containing compound metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                phosphorus metabolic process
                                        regulation of phosphorus metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                regulation of cellular metabolic process
                                        regulation of cellular protein metabolic process
                                                regulation of protein modification process
                                                        negative regulation of protein modification process +
                                                        positive regulation of protein modification process +
                                                        regulation of histone modification +
                                                        regulation of N-terminal protein palmitoylation +
                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                        regulation of post-translational protein modification +
                                                        regulation of protein acetylation +
                                                        regulation of protein adenylylation +
                                                        regulation of protein deacetylation +
                                                        regulation of protein deneddylation +
                                                        regulation of protein dephosphorylation +
                                                        regulation of protein desumoylation +
                                                        regulation of protein deubiquitination +
                                                        regulation of protein geranylgeranylation +
                                                        regulation of protein glutathionylation +
                                                        regulation of protein glycosylation +
                                                        regulation of protein neddylation +
                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                negative regulation of protein phosphorylation +
                                                                positive regulation of protein phosphorylation +
                                                                regulation of actin phosphorylation
                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                regulation of histone phosphorylation +
                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                regulation of peptidyl-serine phosphorylation +
                                                                regulation of peptidyl-threonine phosphorylation +
                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                regulation of protein autophosphorylation +
                                                                regulation of protein kinase activity +
                                                        regulation of protein sumoylation +
                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        cellular metabolic process
                                regulation of cellular metabolic process
                                        regulation of phosphorus metabolic process
                                                regulation of phosphate metabolic process
                                                        regulation of phosphorylation
                                                                negative regulation of phosphorylation +
                                                                positive regulation of phosphorylation +
                                                                regulation of kinase activity +
                                                                regulation of oxidative phosphorylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        cellular macromolecule metabolic process
                                                cellular protein metabolic process
                                                        cellular protein modification process
                                                                protein phosphorylation
                                                                        actin phosphorylation +
                                                                        common-partner SMAD protein phosphorylation
                                                                        DNA damage induced protein phosphorylation
                                                                        histone phosphorylation +
                                                                        I-kappaB phosphorylation
                                                                        inhibitory G-protein coupled receptor phosphorylation
                                                                        JUN phosphorylation
                                                                        negative regulation of protein phosphorylation +
                                                                        pathway-restricted SMAD protein phosphorylation +
                                                                        peptidyl-arginine phosphorylation
                                                                        peptidyl-aspartic acid phosphorylation +
                                                                        peptidyl-cysteine phosphorylation +
                                                                        peptidyl-histidine phosphorylation +
                                                                        peptidyl-serine phosphorylation +
                                                                        peptidyl-threonine phosphorylation +
                                                                        peptidyl-tyrosine phosphorylation +
                                                                        phosphorylation of RNA polymerase II C-terminal domain +
                                                                        positive regulation of protein phosphorylation +
                                                                        protein autophosphorylation +
                                                                        protein phosphorylation involved in cellular protein catabolic process
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        cellular macromolecule metabolic process
                                                cellular protein metabolic process
                                                        cellular protein modification process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        cellular macromolecule metabolic process
                                                cellular protein metabolic process
                                                        regulation of cellular protein metabolic process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        macromolecule modification
                                                protein modification process
                                                        cellular protein modification process
                                                                protein phosphorylation
                                                                        actin phosphorylation +
                                                                        common-partner SMAD protein phosphorylation
                                                                        DNA damage induced protein phosphorylation
                                                                        histone phosphorylation +
                                                                        I-kappaB phosphorylation
                                                                        inhibitory G-protein coupled receptor phosphorylation
                                                                        JUN phosphorylation
                                                                        negative regulation of protein phosphorylation +
                                                                        pathway-restricted SMAD protein phosphorylation +
                                                                        peptidyl-arginine phosphorylation
                                                                        peptidyl-aspartic acid phosphorylation +
                                                                        peptidyl-cysteine phosphorylation +
                                                                        peptidyl-histidine phosphorylation +
                                                                        peptidyl-serine phosphorylation +
                                                                        peptidyl-threonine phosphorylation +
                                                                        peptidyl-tyrosine phosphorylation +
                                                                        phosphorylation of RNA polymerase II C-terminal domain +
                                                                        positive regulation of protein phosphorylation +
                                                                        protein autophosphorylation +
                                                                        protein phosphorylation involved in cellular protein catabolic process
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        macromolecule modification
                                                protein modification process
                                                        cellular protein modification process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        protein metabolic process
                                                cellular protein metabolic process
                                                        cellular protein modification process
                                                                protein phosphorylation
                                                                        actin phosphorylation +
                                                                        common-partner SMAD protein phosphorylation
                                                                        DNA damage induced protein phosphorylation
                                                                        histone phosphorylation +
                                                                        I-kappaB phosphorylation
                                                                        inhibitory G-protein coupled receptor phosphorylation
                                                                        JUN phosphorylation
                                                                        negative regulation of protein phosphorylation +
                                                                        pathway-restricted SMAD protein phosphorylation +
                                                                        peptidyl-arginine phosphorylation
                                                                        peptidyl-aspartic acid phosphorylation +
                                                                        peptidyl-cysteine phosphorylation +
                                                                        peptidyl-histidine phosphorylation +
                                                                        peptidyl-serine phosphorylation +
                                                                        peptidyl-threonine phosphorylation +
                                                                        peptidyl-tyrosine phosphorylation +
                                                                        phosphorylation of RNA polymerase II C-terminal domain +
                                                                        positive regulation of protein phosphorylation +
                                                                        protein autophosphorylation +
                                                                        protein phosphorylation involved in cellular protein catabolic process
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        protein metabolic process
                                                cellular protein metabolic process
                                                        cellular protein modification process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        protein metabolic process
                                                cellular protein metabolic process
                                                        regulation of cellular protein metabolic process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        protein metabolic process
                                                protein modification process
                                                        cellular protein modification process
                                                                protein phosphorylation
                                                                        actin phosphorylation +
                                                                        common-partner SMAD protein phosphorylation
                                                                        DNA damage induced protein phosphorylation
                                                                        histone phosphorylation +
                                                                        I-kappaB phosphorylation
                                                                        inhibitory G-protein coupled receptor phosphorylation
                                                                        JUN phosphorylation
                                                                        negative regulation of protein phosphorylation +
                                                                        pathway-restricted SMAD protein phosphorylation +
                                                                        peptidyl-arginine phosphorylation
                                                                        peptidyl-aspartic acid phosphorylation +
                                                                        peptidyl-cysteine phosphorylation +
                                                                        peptidyl-histidine phosphorylation +
                                                                        peptidyl-serine phosphorylation +
                                                                        peptidyl-threonine phosphorylation +
                                                                        peptidyl-tyrosine phosphorylation +
                                                                        phosphorylation of RNA polymerase II C-terminal domain +
                                                                        positive regulation of protein phosphorylation +
                                                                        protein autophosphorylation +
                                                                        protein phosphorylation involved in cellular protein catabolic process
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        protein metabolic process
                                                protein modification process
                                                        cellular protein modification process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        protein metabolic process
                                                regulation of protein metabolic process
                                                        regulation of cellular protein metabolic process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        organic substance metabolic process
                                macromolecule metabolic process
                                        regulation of macromolecule metabolic process
                                                regulation of protein metabolic process
                                                        regulation of cellular protein metabolic process
                                                                regulation of protein modification process
                                                                        negative regulation of protein modification process +
                                                                        positive regulation of protein modification process +
                                                                        regulation of histone modification +
                                                                        regulation of N-terminal protein palmitoylation +
                                                                        regulation of peptidyl-cysteine S-nitrosylation +
                                                                        regulation of post-translational protein modification +
                                                                        regulation of protein acetylation +
                                                                        regulation of protein adenylylation +
                                                                        regulation of protein deacetylation +
                                                                        regulation of protein deneddylation +
                                                                        regulation of protein dephosphorylation +
                                                                        regulation of protein desumoylation +
                                                                        regulation of protein deubiquitination +
                                                                        regulation of protein geranylgeranylation +
                                                                        regulation of protein glutathionylation +
                                                                        regulation of protein glycosylation +
                                                                        regulation of protein neddylation +
                                                                        regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                                negative regulation of protein phosphorylation +
                                                                                positive regulation of protein phosphorylation +
                                                                                regulation of actin phosphorylation
                                                                                regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                                regulation of eIF2 alpha phosphorylation by dsRNA
                                                                                regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                                regulation of eIF2 alpha phosphorylation by heme
                                                                                regulation of histone phosphorylation +
                                                                                regulation of pathway-restricted SMAD protein phosphorylation +
                                                                                regulation of peptidyl-serine phosphorylation +
                                                                                regulation of peptidyl-threonine phosphorylation +
                                                                                regulation of peptidyl-tyrosine phosphorylation +
                                                                                regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                                regulation of protein autophosphorylation +
                                                                                regulation of protein kinase activity +
                                                                        regulation of protein sumoylation +
                                                                        regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        primary metabolic process
                                protein metabolic process
                                        cellular protein metabolic process
                                                cellular protein modification process
                                                        protein phosphorylation
                                                                actin phosphorylation +
                                                                common-partner SMAD protein phosphorylation
                                                                DNA damage induced protein phosphorylation
                                                                histone phosphorylation +
                                                                I-kappaB phosphorylation
                                                                inhibitory G-protein coupled receptor phosphorylation
                                                                JUN phosphorylation
                                                                negative regulation of protein phosphorylation +
                                                                pathway-restricted SMAD protein phosphorylation +
                                                                peptidyl-arginine phosphorylation
                                                                peptidyl-aspartic acid phosphorylation +
                                                                peptidyl-cysteine phosphorylation +
                                                                peptidyl-histidine phosphorylation +
                                                                peptidyl-serine phosphorylation +
                                                                peptidyl-threonine phosphorylation +
                                                                peptidyl-tyrosine phosphorylation +
                                                                phosphorylation of RNA polymerase II C-terminal domain +
                                                                positive regulation of protein phosphorylation +
                                                                protein autophosphorylation +
                                                                protein phosphorylation involved in cellular protein catabolic process
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        primary metabolic process
                                protein metabolic process
                                        cellular protein metabolic process
                                                cellular protein modification process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        primary metabolic process
                                protein metabolic process
                                        cellular protein metabolic process
                                                regulation of cellular protein metabolic process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        primary metabolic process
                                protein metabolic process
                                        protein modification process
                                                cellular protein modification process
                                                        protein phosphorylation
                                                                actin phosphorylation +
                                                                common-partner SMAD protein phosphorylation
                                                                DNA damage induced protein phosphorylation
                                                                histone phosphorylation +
                                                                I-kappaB phosphorylation
                                                                inhibitory G-protein coupled receptor phosphorylation
                                                                JUN phosphorylation
                                                                negative regulation of protein phosphorylation +
                                                                pathway-restricted SMAD protein phosphorylation +
                                                                peptidyl-arginine phosphorylation
                                                                peptidyl-aspartic acid phosphorylation +
                                                                peptidyl-cysteine phosphorylation +
                                                                peptidyl-histidine phosphorylation +
                                                                peptidyl-serine phosphorylation +
                                                                peptidyl-threonine phosphorylation +
                                                                peptidyl-tyrosine phosphorylation +
                                                                phosphorylation of RNA polymerase II C-terminal domain +
                                                                positive regulation of protein phosphorylation +
                                                                protein autophosphorylation +
                                                                protein phosphorylation involved in cellular protein catabolic process
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of translational initiation by eIF2 alpha phosphorylation +

---

Gene_Ontology
        biological_process
                metabolic process
                        primary metabolic process
                                protein metabolic process
                                        protein modification process
                                                cellular protein modification process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation
                                                                        regulation of eIF2 alpha phosphorylation by amino acid starvation
                                                                        regulation of eIF2 alpha phosphorylation by dsRNA
                                                                        regulation of eIF2 alpha phosphorylation by endoplasmic reticulum stress
                                                                        regulation of eIF2 alpha phosphorylation by heme
                                                                        regulation of histone phosphorylation +
                                                                        regulation of pathway-restricted SMAD protein phosphorylation +
                                                                        regulation of peptidyl-serine phosphorylation +
                                                                        regulation of peptidyl-threonine phosphorylation +
                                                                        regulation of peptidyl-tyrosine phosphorylation +
                                                                        regulation of phosphorylation of RNA polymerase II C-terminal domain +
                                                                        regulation of protein autophosphorylation +
                                                                        regulation of protein kinase activity +
                                                                regulation of protein sumoylation +
                                                                regulation of protein ubiquitination +

---

Gene_Ontology
        biological_process
                metabolic process
                        primary metabolic process
                                protein metabolic process
                                        regulation of protein metabolic process
                                                regulation of cellular protein metabolic process
                                                        regulation of protein modification process
                                                                negative regulation of protein modification process +
                                                                positive regulation of protein modification process +
                                                                regulation of histone modification +
                                                                regulation of N-terminal protein palmitoylation +
                                                                regulation of peptidyl-cysteine S-nitrosylation +
                                                                regulation of post-translational protein modification +
                                                                regulation of protein acetylation +
                                                                regulation of protein adenylylation +
                                                                regulation of protein deacetylation +
                                                                regulation of protein deneddylation +
                                                                regulation of protein dephosphorylation +
                                                                regulation of protein desumoylation +
                                                                regulation of protein deubiquitination +
                                                                regulation of protein geranylgeranylation +
                                                                regulation of protein glutathionylation +
                                                                regulation of protein glycosylation +
                                                                regulation of protein neddylation +
                                                                regulation of protein phosphorylation [GO:0001932] (729 genes, 1270 annotations)
                                                                        negative regulation of protein phosphorylation +
                                                                        positive regulation of protein phosphorylation +
                                                                        regulation of actin phosphorylation