MGI 5.13 - Gene Ontology Browser

Gene Ontology Browser
Term Detail

GO term:	RNA polymerase II core promoter sequence-specific DNA binding
GO id:	GO:0000979
Definition:	Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factors of the RNA polymerase II basal transcription machinery.
Number of paths to term:	20

denotes an 'is-a' relationship
denotes a 'part-of' relationship
denotes a 'regulates' relationship
denotes a 'positively-regulates' relationship
denotes a 'negatively-regulates' relationship

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

core promoter binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

RNA polymerase II regulatory region DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

DNA binding

sequence-specific DNA binding

transcription regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

DNA binding

sequence-specific DNA binding

transcription regulatory region sequence-specific DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

core promoter binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

RNA polymerase II regulatory region DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

heterocyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

core promoter binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

RNA polymerase II regulatory region DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

DNA binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

DNA binding

sequence-specific DNA binding

transcription regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

DNA binding

sequence-specific DNA binding

transcription regulatory region sequence-specific DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

core promoter binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

RNA polymerase II regulatory region DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

core promoter sequence-specific DNA binding

bacterial-type RNA polymerase core promoter sequence-specific DNA binding

mitochondrial RNA polymerase core promoter sequence-specific DNA binding

RNA polymerase I CORE element sequence-specific DNA binding

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

Gene_Ontology

molecular_function

binding

organic cyclic compound binding

nucleic acid binding

regulatory region nucleic acid binding

regulatory region DNA binding

transcription regulatory region DNA binding

transcription regulatory region sequence-specific DNA binding

RNA polymerase II regulatory region sequence-specific DNA binding

RNA polymerase II core promoter proximal region sequence-specific DNA binding +

RNA polymerase II core promoter sequence-specific DNA binding [GO:0000979] (28 genes, 31 annotations)

RNA polymerase II distal enhancer sequence-specific DNA binding

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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