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MGI Includes
Genes, Genome Features & Maps
43,165
Genes (including uncloned mutants)
35,578
Genes with nucleotide sequence data
24,607
Genes with protein sequence data
16,334
Genes with experimentally-based functional annotations
13,382
Genes with gene traps
13,815
Genes with expression assay results
102,537
Mapped genes/markers
Phenotypes, Alleles & Disease Models
40,614
Mutant alleles in mice
711,559
Mutant alleles in cell lines only
10,402
Genes with mutant alleles in mice
9,705
Genes with mutant alleles in cell lines only
54,469
Total targeted alleles
16,681
Genes with targeted alleles
2,202
Total recombinase transgenes and alleles
52,820
Genotypes with phenotype annotations
1,327
Human diseases with one or more mouse models
4,471
Mouse genotypes modeling human diseases
10,414
Mammalian Phenotype (MP) ontology terms
274,195
MP annotations total
4,878
QTL
Gene Expression
15,158
Genes studied in expression references
13,815
Genes with expression assay results
1,464,201
Expression assay results
264,305
Expression images
67,840
Expression assays
2,022
Mouse mutants with expression data
Recombinase Allele Data
687
Recombinase-containing knock-in alleles
1,515
Recombinase-containing transgenes
2,202
Total recombinase transgenes and alleles
592
Drivers in recombinase transgenes
418
Drivers in recombinase knock-in alleles
3,325
Tissues in recombinase specificity assays
GO Functional Annotations
24,317
Mouse protein-coding genes with GO annotations
11,151
Mouse protein-coding genes with experimentally-derived in mouse GO annotations
26,048
Mouse genes with 'complete' annotations based on current literature review
294,347
GO annotations total
22,251
Unique references used for GO annotations
987
Mouse genes selected for GO Reference Genome Project
Biochemical Pathways
347
Pathways
2,018
Enzymatic reactions
9
Transport reactions
39,629
Polypeptides
6
Protein complexes
3,000
Enzymes
61
Transporters
1,337
Compounds
Strains, SNPs & Polymorphisms
15,908,632
RefSNPs
89
Strains with SNPs
10,649
RFLP records
12,035
PCR polymorphism records
3,355
Genes with polymorphisms (RFLP, PCR)
13,014
Markers with polymorphisms (RFLP, PCR)
21,392
Strains
Vertebrate Homology
22,944
Mouse protein coding genes
20,388
Mouse protein coding genes in homology classes
17,054
Mouse protein coding genes in homology classes with Human genes
16,410
Mouse protein coding genes in homology classes with one-to-one correspondence of Mouse and Human genes
18,458
Mouse protein coding genes in homology classes with Rat genes
16,222
Mouse protein coding genes in homology classes with Chimpanzee genes
14,694
Mouse protein coding genes in homology classes with Rhesus macaque genes
16,301
Mouse protein coding genes in homology classes with Dog genes
16,423
Mouse protein coding genes in homology classes with Cattle genes
12,239
Mouse protein coding genes in homology classes with Chicken genes
12,512
Mouse protein coding genes in homology classes with Western clawed frog genes
12,026
Mouse protein coding genes in homology classes with Zebrafish genes
Sequences
4,999,410
Mouse nucleotide sequences
6,984,925
Mouse transcript sequences
311,427
Mouse polypeptide sequences
References
208,139
References

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory