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MGI Includes
Genes, Genome Features & Maps
55,344
Genes (including uncloned mutants)
48,260
Genes with nucleotide sequence data
24,166
Genes with protein sequence data
17,804
Genes with experimentally-based functional annotations
15,063
Genes with gene traps
14,280
Genes with expression assay results
145,179
Mapped genes/markers
Phenotypes, Alleles & Disease Models
48,720
Mutant alleles in mice
709,197
Mutant alleles in cell lines only
11,992
Genes with mutant alleles in mice
9,854
Genes with mutant alleles in cell lines only
58,847
Total targeted alleles
16,824
Genes with targeted alleles
2,565
Total recombinase transgenes and alleles
58,579
Genotypes with phenotype annotations
1,480
Human diseases with one or more mouse models
4,983
Mouse genotypes modeling human diseases
11,396
Mammalian Phenotype (MP) ontology terms
299,841
MP annotations total
5,431
QTL
Gene Expression
15,585
Genes studied in expression references
14,280
Genes with expression assay results
1,546,617
Expression assay results
299,550
Expression images
75,416
Expression assays
3,111
Mouse mutants with expression data
Recombinase Allele Data
955
Recombinase-containing knock-in alleles
1,610
Recombinase-containing transgenes
2,565
Total recombinase transgenes and alleles
666
Drivers in recombinase transgenes
622
Drivers in recombinase knock-in alleles
3,586
Tissues in recombinase specificity assays
GO Functional Annotations
24,230
Mouse protein-coding genes with GO annotations
11,778
Mouse protein-coding genes with experimentally-derived in mouse GO annotations
26,079
Mouse genes with 'complete' annotations based on current literature review
313,208
GO annotations total
24,775
Unique references used for GO annotations
987
Mouse genes selected for GO Reference Genome Project
Biochemical Pathways
347
Pathways
2,018
Enzymatic reactions
9
Transport reactions
39,629
Polypeptides
6
Protein complexes
3,000
Enzymes
61
Transporters
1,337
Compounds
Strains, SNPs & Polymorphisms
15,663,546
RefSNPs
88
Strains with SNPs
10,649
RFLP records
12,035
PCR polymorphism records
3,354
Genes with polymorphisms (RFLP, PCR)
13,010
Markers with polymorphisms (RFLP, PCR)
26,790
Strains
Vertebrate Homology
22,985
Mouse protein coding genes
20,514
Mouse protein coding genes in homology classes
17,102
Mouse protein coding genes in homology classes with Human genes
16,428
Mouse protein coding genes in homology classes with one-to-one correspondence of Mouse and Human genes
18,548
Mouse protein coding genes in homology classes with Rat genes
16,269
Mouse protein coding genes in homology classes with Chimpanzee genes
14,735
Mouse protein coding genes in homology classes with Rhesus macaque genes
16,339
Mouse protein coding genes in homology classes with Dog genes
16,469
Mouse protein coding genes in homology classes with Cattle genes
12,261
Mouse protein coding genes in homology classes with Chicken genes
12,551
Mouse protein coding genes in homology classes with Western clawed frog genes
12,052
Mouse protein coding genes in homology classes with Zebrafish genes
Sequences
5,043,602
Mouse nucleotide sequences
6,949,860
Mouse transcript sequences
362,231
Mouse polypeptide sequences
References
227,341
References

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory