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MGI Includes
Genes, Genome Features & Maps
55,338
Genes (including uncloned mutants)
48,260
Genes with nucleotide sequence data
24,427
Genes with protein sequence data
17,777
Genes with experimentally-based functional annotations
15,063
Genes with gene traps
14,268
Genes with expression assay results
145,172
Mapped genes/markers
Phenotypes, Alleles & Disease Models
48,454
Mutant alleles in mice
709,347
Mutant alleles in cell lines only
11,920
Genes with mutant alleles in mice
9,923
Genes with mutant alleles in cell lines only
58,778
Total targeted alleles
16,823
Genes with targeted alleles
2,558
Total recombinase transgenes and alleles
58,453
Genotypes with phenotype annotations
1,481
Human diseases with one or more mouse models
4,982
Mouse genotypes modeling human diseases
11,380
Mammalian Phenotype (MP) ontology terms
299,157
MP annotations total
5,390
QTL
Gene Expression
15,583
Genes studied in expression references
14,268
Genes with expression assay results
1,544,535
Expression assay results
299,382
Expression images
75,215
Expression assays
3,103
Mouse mutants with expression data
Recombinase Allele Data
950
Recombinase-containing knock-in alleles
1,608
Recombinase-containing transgenes
2,558
Total recombinase transgenes and alleles
666
Drivers in recombinase transgenes
617
Drivers in recombinase knock-in alleles
3,586
Tissues in recombinase specificity assays
GO Functional Annotations
24,231
Mouse protein-coding genes with GO annotations
11,767
Mouse protein-coding genes with experimentally-derived in mouse GO annotations
26,079
Mouse genes with 'complete' annotations based on current literature review
312,545
GO annotations total
24,762
Unique references used for GO annotations
987
Mouse genes selected for GO Reference Genome Project
Biochemical Pathways
347
Pathways
2,018
Enzymatic reactions
9
Transport reactions
39,629
Polypeptides
6
Protein complexes
3,000
Enzymes
61
Transporters
1,337
Compounds
Strains, SNPs & Polymorphisms
15,663,546
RefSNPs
88
Strains with SNPs
10,649
RFLP records
12,035
PCR polymorphism records
3,354
Genes with polymorphisms (RFLP, PCR)
13,010
Markers with polymorphisms (RFLP, PCR)
26,704
Strains
Vertebrate Homology
22,985
Mouse protein coding genes
20,515
Mouse protein coding genes in homology classes
17,101
Mouse protein coding genes in homology classes with Human genes
16,427
Mouse protein coding genes in homology classes with one-to-one correspondence of Mouse and Human genes
18,547
Mouse protein coding genes in homology classes with Rat genes
16,268
Mouse protein coding genes in homology classes with Chimpanzee genes
14,735
Mouse protein coding genes in homology classes with Rhesus macaque genes
16,337
Mouse protein coding genes in homology classes with Dog genes
16,467
Mouse protein coding genes in homology classes with Cattle genes
12,259
Mouse protein coding genes in homology classes with Chicken genes
12,550
Mouse protein coding genes in homology classes with Western clawed frog genes
12,051
Mouse protein coding genes in homology classes with Zebrafish genes
Sequences
5,035,337
Mouse nucleotide sequences
6,931,757
Mouse transcript sequences
351,988
Mouse polypeptide sequences
References
226,589
References

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory