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MGI Includes
Genes, Genome Features & Maps
55,349
Genes (including uncloned mutants)
48,265
Genes with nucleotide sequence data
24,432
Genes with protein sequence data
17,760
Genes with experimentally-based functional annotations
15,046
Genes with gene traps
14,253
Genes with expression assay results
147,971
Mapped genes/markers
Phenotypes, Alleles & Disease Models
48,216
Mutant alleles in mice
709,432
Mutant alleles in cell lines only
11,843
Genes with mutant alleles in mice
9,996
Genes with mutant alleles in cell lines only
58,695
Total targeted alleles
16,822
Genes with targeted alleles
2,556
Total recombinase transgenes and alleles
58,324
Genotypes with phenotype annotations
1,476
Human diseases with one or more mouse models
4,963
Mouse genotypes modeling human diseases
11,357
Mammalian Phenotype (MP) ontology terms
298,233
MP annotations total
5,377
QTL
Gene Expression
15,565
Genes studied in expression references
14,253
Genes with expression assay results
1,541,237
Expression assay results
298,729
Expression images
74,848
Expression assays
3,075
Mouse mutants with expression data
Recombinase Allele Data
948
Recombinase-containing knock-in alleles
1,608
Recombinase-containing transgenes
2,556
Total recombinase transgenes and alleles
666
Drivers in recombinase transgenes
616
Drivers in recombinase knock-in alleles
3,582
Tissues in recombinase specificity assays
GO Functional Annotations
24,230
Mouse protein-coding genes with GO annotations
11,758
Mouse protein-coding genes with experimentally-derived in mouse GO annotations
26,082
Mouse genes with 'complete' annotations based on current literature review
312,119
GO annotations total
24,730
Unique references used for GO annotations
987
Mouse genes selected for GO Reference Genome Project
Biochemical Pathways
347
Pathways
2,018
Enzymatic reactions
9
Transport reactions
39,629
Polypeptides
6
Protein complexes
3,000
Enzymes
61
Transporters
1,337
Compounds
Strains, SNPs & Polymorphisms
15,663,546
RefSNPs
88
Strains with SNPs
10,649
RFLP records
12,035
PCR polymorphism records
3,354
Genes with polymorphisms (RFLP, PCR)
13,010
Markers with polymorphisms (RFLP, PCR)
26,607
Strains
Vertebrate Homology
22,990
Mouse protein coding genes
20,515
Mouse protein coding genes in homology classes
17,098
Mouse protein coding genes in homology classes with Human genes
16,424
Mouse protein coding genes in homology classes with one-to-one correspondence of Mouse and Human genes
18,547
Mouse protein coding genes in homology classes with Rat genes
16,266
Mouse protein coding genes in homology classes with Chimpanzee genes
14,733
Mouse protein coding genes in homology classes with Rhesus macaque genes
16,334
Mouse protein coding genes in homology classes with Dog genes
16,464
Mouse protein coding genes in homology classes with Cattle genes
12,256
Mouse protein coding genes in homology classes with Chicken genes
12,548
Mouse protein coding genes in homology classes with Western clawed frog genes
12,048
Mouse protein coding genes in homology classes with Zebrafish genes
Sequences
5,035,332
Mouse nucleotide sequences
6,931,744
Mouse transcript sequences
352,050
Mouse polypeptide sequences
References
225,707
References

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/24/2016
MGI 6.04
The Jackson Laboratory