Rc3h1 GO Annotations Graph

GO Annotations Graph

Symbol
Name
ID

Rc3h1
RING CCCH (C3H) domains 1
MGI:2685397

GO annotations (Text View) (Tabular View)

A table of the annotations represented in this image is provided below.

Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
Graph generated Fri Mar 10 20:53:16 2023.

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP: Inferred from experiment
HMP: Inferred from high throughput mutant phenotype
HGI: Inferred from high throughput genetic interaction
HDA: Inferred from high throughput direct assay
HEP: Inferred from high throughput expression pattern
IDA: Inferred from direct assay
IEP: Inferred from expression pattern
IGI: Inferred from genetic interaction
IMP: Inferred from mutant phenotype
IPI: Inferred from physical interaction

Homology:

IAS: Inferred from ancestral sequence
IBA: Inferred from biological aspect of ancestor
IBD: Inferred from biological aspect of descendant
IKR: Inferred from key residues
IMR: Inferred from missing residues
IRD: Inferred from rapid divergence
ISA: Inferred from sequence alignment
ISM: Inferred from sequence model
ISO: Inferred from sequence orthology
ISS: Inferred from sequence or structural similarity

Automated:

IEA: Inferred from electronic annotation
RCA: Reviewed computational analysis

Other:

IC: Inferred by curator
NAS: Non-traceable author statement
ND: No biological data available
TAS: Traceable author statement

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:1905762	CCR4-NOT complex binding	ISO	J:164563
Molecular Function	GO:0003725	double-stranded RNA binding	ISO	J:164563
Molecular Function	GO:0046872	metal ion binding	IEA	J:72247
Molecular Function	GO:0046872	metal ion binding	IEA	J:60000
Molecular Function	GO:0035198	miRNA binding	IDA	J:221791
Molecular Function	GO:0003730	mRNA 3'-UTR binding	IDA	J:229326
Molecular Function	GO:0003730	mRNA 3'-UTR binding	IDA	J:162534
Molecular Function	GO:0003730	mRNA 3'-UTR binding	IDA	J:228359
Molecular Function	GO:0003729	mRNA binding	IDA	J:196136
Molecular Function	GO:0005515	protein binding	IPI	J:162534
Molecular Function	GO:0005515	protein binding	IPI	J:221791
Molecular Function	GO:0005515	protein binding	IPI	J:196136
Molecular Function	GO:0003723	RNA binding	IEA	J:60000
Molecular Function	GO:0035613	RNA stem-loop binding	IDA	J:261058
Molecular Function	GO:0035613	RNA stem-loop binding	IDA	J:228359
Molecular Function	GO:0035613	RNA stem-loop binding	IDA	J:229326
Molecular Function	GO:0035613	RNA stem-loop binding	ISO	J:164563
Molecular Function	GO:0016740	transferase activity	IEA	J:60000
Molecular Function	GO:0061630	ubiquitin protein ligase activity	IBA	J:265628
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	ISO	J:164563
Molecular Function	GO:0008270	zinc ion binding	IDA	J:221791
Cellular Component	GO:0005737	cytoplasm	IDA	J:98938
Cellular Component	GO:0010494	cytoplasmic stress granule	IDA	J:228359
Cellular Component	GO:0010494	cytoplasmic stress granule	IDA	J:98938
Cellular Component	GO:0010494	cytoplasmic stress granule	IDA	J:162534
Cellular Component	GO:0010494	cytoplasmic stress granule	IDA	J:229326
Cellular Component	GO:0000932	P-body	IDA	J:229326
Cellular Component	GO:0000932	P-body	IDA	J:162534
Cellular Component	GO:0000932	P-body	ISO	J:164563
Cellular Component	GO:0000932	P-body	IDA	J:228359
Biological Process	GO:0061158	3'-UTR-mediated mRNA destabilization	IDA	J:229326
Biological Process	GO:0061158	3'-UTR-mediated mRNA destabilization	IDA	J:228359
Biological Process	GO:0001782	B cell homeostasis	IGI	J:196136
Biological Process	GO:0071347	cellular response to interleukin-1	IDA	J:229326
Biological Process	GO:0048535	lymph node development	IGI	J:196136
Biological Process	GO:0046007	negative regulation of activated T cell proliferation	IMP	J:175161
Biological Process	GO:0030889	negative regulation of B cell proliferation	IMP	J:175161
Biological Process	GO:0002635	negative regulation of germinal center formation	IMP	J:175161
Biological Process	GO:2000320	negative regulation of T-helper 17 cell differentiation	IMP	J:259145
Biological Process	GO:0045623	negative regulation of T-helper cell differentiation	IMP	J:98938
Biological Process	GO:0000956	nuclear-transcribed mRNA catabolic process	IMP	J:162534
Biological Process	GO:0000956	nuclear-transcribed mRNA catabolic process	ISO	J:164563
Biological Process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IMP	J:229326
Biological Process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IMP	J:228359
Biological Process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	IBA	J:265628
Biological Process	GO:0033962	P-body assembly	IMP	J:162534
Biological Process	GO:0061014	positive regulation of mRNA catabolic process	IDA	J:229326
Biological Process	GO:0061014	positive regulation of mRNA catabolic process	IDA	J:228359
Biological Process	GO:0061014	positive regulation of mRNA catabolic process	IMP	J:261058
Biological Process	GO:1901224	positive regulation of NIK/NF-kappaB signaling	IDA	J:196136
Biological Process	GO:0010608	post-transcriptional regulation of gene expression	IMP	J:261058
Biological Process	GO:0010608	post-transcriptional regulation of gene expression	IMP	J:162534
Biological Process	GO:0010608	post-transcriptional regulation of gene expression	IDA	J:196136
Biological Process	GO:0000209	protein polyubiquitination	ISO	J:164563
Biological Process	GO:0010468	regulation of gene expression	IDA	J:196136
Biological Process	GO:0002634	regulation of germinal center formation	IMP	J:98938
Biological Process	GO:0002634	regulation of germinal center formation	IMP	J:146622
Biological Process	GO:2000628	regulation of miRNA metabolic process	IMP	J:221791
Biological Process	GO:2000628	regulation of miRNA metabolic process	IMP	J:281595
Biological Process	GO:0043488	regulation of mRNA stability	IMP	J:175161
Biological Process	GO:1900151	regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	ISO	J:164563
Biological Process	GO:0050863	regulation of T cell activation	IEA	J:72247
Biological Process	GO:0042129	regulation of T cell proliferation	IEA	J:72247
Biological Process	GO:0050856	regulation of T cell receptor signaling pathway	IMP	J:98938
Biological Process	GO:0048536	spleen development	IGI	J:196136
Biological Process	GO:0043029	T cell homeostasis	IGI	J:196136
Biological Process	GO:0042098	T cell proliferation	IGI	J:196136
Biological Process	GO:0050852	T cell receptor signaling pathway	IMP	J:259145
Biological Process	GO:0061470	T follicular helper cell differentiation	IGI	J:196136
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process	IBA	J:265628

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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