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Trgv4 Gene Detail
Summary
  • Symbol
    Trgv4
  • Name
    T cell receptor gamma, variable 4
  • Synonyms
    Tcrg-V4
  • Feature Type
    gene segment
  • IDs
    MGI:98634
    NCBI Gene: 21638
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:19184981-19185506 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 6.89 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    23 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98634
gene segment Chr13:19184974-19185506 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002511
gene segment Chr13:16295416-16295948 (+)
A/J MGP_AJ_G0002484
gene segment Chr13:16077884-16078416 (+)
AKR/J MGP_AKRJ_G0002470
gene segment Chr13:16272600-16273132 (+)
BALB/cJ MGP_BALBcJ_G0002480
gene segment Chr13:16042475-16043007 (+)
C3H/HeJ MGP_C3HHeJ_G0002457
gene segment Chr13:16395031-16395563 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002605
gene segment Chr13:16992568-16993100 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002203
gene segment Chr13:14533456-14533988 (+)
CAST/EiJ MGP_CASTEiJ_G0002419
gene segment Chr13:16137308-16137840 (+)
CBA/J MGP_CBAJ_G0002448
gene segment Chr13:17556062-17556594 (+)
DBA/2J MGP_DBA2J_G0002454
gene segment Chr13:15655699-15656231 (+)
FVB/NJ MGP_FVBNJ_G0002467
gene segment Chr13:15343757-15344289 (+)
LP/J MGP_LPJ_G0002509
gene segment Chr13:16581693-16582225 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002437
gene segment Chr13:17953414-17953946 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002600
gene segment Chr13:16084385-16084917 (+)
PWK/PhJ MGP_PWKPhJ_G0002394
gene segment Chr13:15693261-15693793 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002331
gene segment Chr13:15208041-15208573 (+)
WSB/EiJ MGP_WSBEiJ_G0002450
gene segment Chr13:16119139-16119671 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 21638 NCBI Gene Model | MGI Sequence Detail 526 C57BL/6J ±  kb
transcript Z48590 GenBank | EMBL | DDBJ | MGI Sequence Detail 287 ABL  
polypeptide A0A0B4J1J8 UniProt | EBI | MGI Sequence Detail 138 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 20
    Genomic 8
    cDNA 8
    Other 4
Other
Accession IDs
less
MGD-MRK-14926, MGI:2145267
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:8286 Garman RD, et al., Diversity, rearrangement, and expression of murine T cell gamma genes. Cell. 1986 Jun 6;45(5):733-42
  • Latest
    J:237787 Liu X, et al., Decreased expression levels of Ifi genes is associated to the increased resistance to spontaneous arthritis disease in mice deficiency of IL-1RA. BMC Immunol. 2016 Aug 02;17(1):25

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/15/2019
MGI 6.14
The Jackson Laboratory