Gm44199 Gene Detail

Summary

• Symbol
  Gm44199
• Name
  predicted gene, 44199

• Feature Type
  lncRNA gene
• IDs
  MGI:5690591
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:113587279-113589406 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  40 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5690591	lncRNA gene	Chr6:113587279-113589406 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004338	antisense lncRNA gene	Chr6:116146633-116148758 (-)
A/J	MGP_AJ_G0004315	antisense lncRNA gene	Chr6:111689021-111691146 (-)
AKR/J	MGP_AKRJ_G0004298	antisense lncRNA gene	Chr6:114690308-114692421 (-)
BALB/cJ	MGP_BALBcJ_G0004301	antisense lncRNA gene	Chr6:111634328-111636455 (-)
C3H/HeJ	MGP_C3HHeJ_G0004203	antisense lncRNA gene	Chr6:69608509-69610636 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004451	antisense lncRNA gene	Chr6:119141245-119143372 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003919	antisense lncRNA gene	Chr6:108713963-108716070 (-)
CAST/EiJ	MGP_CASTEiJ_G0004212	antisense lncRNA gene	Chr6:115143798-115145468 (-)
CBA/J	MGP_CBAJ_G0004244	antisense lncRNA gene	Chr6:123851413-123853540 (-)
DBA/2J	MGP_DBA2J_G0004259	antisense lncRNA gene	Chr6:110771128-110773257 (-)
FVB/NJ	MGP_FVBNJ_G0004276	antisense lncRNA gene	Chr6:109772821-109774950 (-)
LP/J	MGP_LPJ_G0004339	antisense lncRNA gene	Chr6:116174729-116176842 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004267	antisense lncRNA gene	Chr6:128103728-128105857 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004448	antisense lncRNA gene	Chr6:114705293-114707412 (-)
PWK/PhJ	MGP_PWKPhJ_G0004165	antisense lncRNA gene	Chr6:109724547-109726652 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004108	antisense lncRNA gene	Chr6:113512255-113514377 (-)
WSB/EiJ	MGP_WSBEiJ_G0004249	antisense lncRNA gene	Chr6:115081089-115083206 (-)

Homology

• Gene Tree
  Gm44199
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107560 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107560	Ensembl Gene Model | MGI Sequence Detail	2128	C57BL/6J
transcript	ENSMUST00000205219	Ensembl | MGI Sequence Detail	739	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;