Gm5553 Pseudogene Detail

Summary

• Symbol
  Gm5553
• Name
  predicted gene 5553
• Synonyms
  Gm43105

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646114
  NCBI Gene: 433874
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:34464062-34464520 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646114	pseudogene	Chr5:34463969-34464585 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013054	pseudogene	Chr5:32523506-32523964 (-)
A/J	MGP_AJ_G0013038	pseudogene	Chr5:31462506-31462964 (-)
AKR/J	MGP_AKRJ_G0013005	pseudogene	Chr5:32669470-32669928 (-)
BALB/cJ	MGP_BALBcJ_G0013018	pseudogene	Chr5:31999999-32000457 (-)
C3H/HeJ	MGP_C3HHeJ_G0012869	pseudogene	Chr5:32711064-32711522 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013377	pseudogene	Chr5:34418419-34418877 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011576	pseudogene	Chr5:29237320-29237778 (-)
CAST/EiJ	MGP_CASTEiJ_G0012601	pseudogene	Chr5:31779380-31779838 (-)
CBA/J	MGP_CBAJ_G0012836	pseudogene	Chr5:35179921-35180379 (-)
DBA/2J	MGP_DBA2J_G0012914	pseudogene	Chr5:31634816-31635274 (-)
FVB/NJ	MGP_FVBNJ_G0012920	pseudogene	Chr5:31073934-31074392 (-)
LP/J	MGP_LPJ_G0012987	pseudogene	Chr5:32951614-32952072 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012938	pseudogene	Chr5:36059618-36060076 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013379	pseudogene	Chr5:32183435-32183893 (-)
PWK/PhJ	MGP_PWKPhJ_G0012420	pseudogene	Chr5:30771746-30772203 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012221	pseudogene	Chr5:31623609-31624064 (-)
WSB/EiJ	MGP_WSBEiJ_G0012638	pseudogene	Chr5:32256978-32257436 (-)

Homology

• Gene Tree
  Gm5553
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  21 phenotype references
  

• All Mutations and Alleles
  9
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  5
• Spontaneous
  1
• Genomic Mutations
  9 involving Gm5553
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000107006 (Evidence)
• NCBI Gene
  433874

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107006	Ensembl Gene Model | MGI Sequence Detail	459	C57BL/6J
transcript	ENSMUST00000202987	Ensembl | MGI Sequence Detail	459	Not Applicable
polypeptide	XP_036021569	RefSeq | MGI Sequence Detail	153	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663242

References

• Summaries
  All 28

  Diseases 1

  Phenotypes 21
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707