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Trav6n-5 Gene Detail
Summary
  • Symbol
    Trav6n-5
  • Name
    T cell receptor alpha variable 6N-5
  • Synonyms
    ENSMUSG00000072087, Gm10894
Location &
Maps
more
  • Sequence Map
    Chr14:53104871-53105344 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3704437
gene segment Chr14:53104871-53105344 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0002499
gene segment Chr14:45634940-45635412 (+)
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002631
gene segment Chr14:49312686-49313154 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002442
gene segment Chr14:44095813-44096282 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0002473
gene segment Chr14:45381075-45381544 (+)
FVB/NJ MGP_FVBNJ_G0002486
gene segment Chr14:44951864-44952351 (+)
LP/J MGP_LPJ_G0002529
gene segment Chr14:47500051-47500520 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002485
gene segment Chr14:50647793-50648258 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002620
gene segment Chr14:46620323-46620793 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002361
gene segment Chr14:43088131-43088596 (+)
WSB/EiJ MGP_WSBEiJ_G0002470
gene segment Chr14:46920398-46920867 (+)



Homology
less
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126451 NCBI Gene Model | MGI Sequence Detail 474 C57BL/6J ±  kb
polypeptide A0A075B621 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 8
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/13/2019
MGI 6.14
The Jackson Laboratory