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BC035947 Gene Detail
Summary
  • Symbol
    BC035947
  • Name
    cDNA sequence BC035947
  • Synonyms
    MGC:37308
  • Feature Type
    protein coding gene
  • IDs
    MGI:2652858
    NCBI Gene: 269211
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr1:78497026-78512158 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 40.57 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2652858
protein coding gene Chr1:78497026-78512158 (-)
129S1/SvImJ MGP_129S1SvImJ_G0016199
protein coding gene Chr1:79218618-79241515 (-)
A/J MGP_AJ_G0016182
protein coding gene Chr1:76452769-76459300 (-)
AKR/J MGP_AKRJ_G0016139
protein coding gene Chr1:78509372-78513403 (-)
BALB/cJ MGP_BALBcJ_G0016137
protein coding gene Chr1:76531332-76535466 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0016590
protein coding gene Chr1:82266437-82289054 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0015552
protein coding gene Chr1:78269197-78273932 (-)
CBA/J MGP_CBAJ_G0015941
protein coding gene Chr1:84963849-84967986 (-)
DBA/2J MGP_DBA2J_G0016042
protein coding gene Chr1:75730608-75756263 (-)
FVB/NJ MGP_FVBNJ_G0016045
protein coding gene Chr1:74923273-74940172 (-)
LP/J MGP_LPJ_G0016114
protein coding gene Chr1:80358908-80365221 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016065
protein coding gene Chr1:88210850-88229483 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016637
protein coding gene Chr1:78654882-78659328 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving BC035947
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090486 Ensembl Gene Model | MGI Sequence Detail 15133 C57BL/6J ±  kb
transcript ENSMUST00000170511 Ensembl | MGI Sequence Detail 3063 Not Applicable  
polypeptide ENSMUSP00000132488 Ensembl | MGI Sequence Detail 695 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR008981 F-MuLV receptor-binding
    IPR001584 Integrase, catalytic core
    IPR040643 Murine leukemia virus integrase, C-terminal
    IPR012337 Ribonuclease H-like superfamily
    IPR036397 Ribonuclease H superfamily
    IPR018154 TLV/ENV coat polyprotein
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
01/05/2021
MGI 6.16
The Jackson Laboratory