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Tug1 Gene Detail
Summary
  • Symbol
    Tug1
  • Name
    taurine upregulated gene 1
Location &
Maps
more
  • Sequence Map
    Chr11:3589785-3598814 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 2.56 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    9 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2144114
lncRNA gene Chr11:3589785-3599673 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015150
unclassified non-coding RNA gene Chr11:526716-537444 (-)
A/J MGP_AJ_G0015124
unclassified non-coding RNA gene Chr11:564011-574549 (-)
AKR/J MGP_AKRJ_G0015087
unclassified non-coding RNA gene Chr11:584436-595678 (-)
BALB/cJ MGP_BALBcJ_G0015087
unclassified non-coding RNA gene Chr11:530755-541892 (-)
C3H/HeJ MGP_C3HHeJ_G0014910
unclassified non-coding RNA gene Chr11:517213-527088 (-)
C57BL/6NJ MGP_C57BL6NJ_G0015543
unclassified non-coding RNA gene Chr11:601339-613134 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013289
unclassified non-coding RNA gene Chr11:467448-477405 (-)
CAST/EiJ MGP_CASTEiJ_G0014464
unclassified non-coding RNA gene Chr11:482558-492462 (-)
CBA/J MGP_CBAJ_G0014889
unclassified non-coding RNA gene Chr11:774772-785913 (-)
DBA/2J MGP_DBA2J_G0014982
unclassified non-coding RNA gene Chr11:477641-488077 (-)
FVB/NJ MGP_FVBNJ_G0014993
unclassified non-coding RNA gene Chr11:508894-518770 (-)
LP/J MGP_LPJ_G0015064
unclassified non-coding RNA gene Chr11:616781-626194 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015020
unclassified non-coding RNA gene Chr11:524124-533911 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0015582
unclassified non-coding RNA gene Chr11:599032-609791 (-)
PWK/PhJ MGP_PWKPhJ_G0014256
unclassified non-coding RNA gene Chr11:465095-475053 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014044
unclassified non-coding RNA gene Chr11:555797-565665 (-)
WSB/EiJ MGP_WSBEiJ_G0014567
unclassified non-coding RNA gene Chr11:475604-485604 (-)



Homology
more
  • Human Ortholog
    TUG1, taurine up-regulated 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TUG1, taurine up-regulated 1
  • Synonyms
    LINC00080, NCRNA00080, TI-227H
  • Links
    NCBI Gene ID: 55000

  • Chr Location
    22q12.2; chr22:30969211-30979395 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Mice homozygous for a null allele are viable.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 544752 NCBI Gene Model | MGI Sequence Detail 9030 C57BL/6J ±  kb
transcript NR_002322 RefSeq | MGI Sequence Detail 6719 C57BL/6  
polypeptide A0A6I8MX38 UniProt | EBI | MGI Sequence Detail 142 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    3 Sequences
  • InterPro Domains
    IPR043502 DNA/RNA polymerase superfamily
    IPR043128 Reverse transcriptase/Diguanylate cyclase domain
Molecular
Reagents
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  • All nucleic 24
    cDNA 22
    Primer pair 1
    Other 1

    Microarray probesets 8
References
more
  • Summaries
    All 30
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:31358 Ishiguro T, et al., Identification of genes differentially expressed in B16 murine melanoma sublines with different metastatic potentials. Cancer Res. 1996 Feb 15;56(4):875-9
  • Latest
    J:307512 Lewandowski JP, et al., The Tug1 lncRNA locus is essential for male fertility. Genome Biol. 2020 Sep 7;21(1):237

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/14/2021
MGI 6.17
The Jackson Laboratory