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Galnt13
Gene Detail
Symbol

Name
ID
Galnt13
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
MGI:2139447
Synonyms
pp-GalNAc-T13
Feature Type
protein coding gene
Genetic Map
Chromosome 2
30.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:54436317-55118309 bp, + strand
From VEGA annotation of GRCm38

  681993 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:62167  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: GALNT13
Gene Tree: Galnt13

Human
homologs
GALNT13, polypeptide N-acetylgalactosaminyltransferase 13
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 114805
neXtProt AC: NX_Q8IUC8

Human Synonyms: GalNAc-T13

Human Chr (Location): 2q24.1; chr2:153871898-154453977 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Galnt13 is expressed exclusively in neuronal cells. Conditional animals can be used with cre-expressing strains to produce total or tissue-specific deletion of this locus.
 
Interactions
Galnt13 interacts with 432 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 94
cDNA source data(16)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase galnt13    NEW 
Molecular
reagents
All nucleic(16) cDNA(16)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000015443 (Evidence)
Ensembl Gene Model ENSMUSG00000060988 (Evidence)
Entrez Gene 271786 (Evidence)
UniGene 330227
DFCI TC1587569, TC1598935, TC1608513
DoTS DT.101366579, DT.101735465, DT.91336231, DT.94267705
NIA Mouse Gene Index U001780
EC 2.4.1.-, 2.4.1.41
Consensus CDS Project CCDS16041.1
International Mouse Phenotyping Consortium Status Galnt13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015443 VEGA Gene Model | MGI Sequence Detail 681993 C57BL/6J ±  kb
transcript OTTMUST00000036658 VEGA | MGI Sequence Detail 7639 Not Applicable 
polypeptide OTTMUSP00000016451 VEGA | MGI Sequence Detail 592 Not Applicable 

For the selected sequences
All sequences(63) RefSeq(19) UniProt(3)
Polymorphisms
SNPs within 2kb(3187 from dbSNP Build 137)    SNPs within 2kb including multiple locations(3325)
Protein-related
information
ResourceIDDescription
InterPro IPR001173 Glycosyltransferase 2-like
InterPro IPR029044 Nucleotide-diphospho-sugar transferases
InterPro IPR000772 Ricin B, lectin domain
Protein Ontology PR:000007822 polypeptide N-acetylgalactosaminyltransferase 13
References
(Earliest) J:67674 Hennet T, et al., T-cell-specific deletion of a polypeptide N-acetylgalactosaminyl-transferase gene by site-directed recombination. Proc Natl Acad Sci U S A. 1995 Dec 19;92(26):12070-4
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(26)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory