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Galnt13 Gene Detail
Summary
  • Symbol
    Galnt13
  • Name
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
  • Synonyms
    pp-GalNAc-T13
  • Feature Type
    protein coding gene
  • IDs
    MGI:2139447
    NCBI Gene: 271786
  • Gene Overview
    MyGene.info: GALNT13
Location & Maps
more
  • Sequence Map
    Chr2:54436317-55118309 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      681993 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 30.77 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    GALNT13, polypeptide N-acetylgalactosaminyltransferase 13
  • Vertebrate Orthologs
    9
  • Human Ortholog
    GALNT13, polypeptide N-acetylgalactosaminyltransferase 13
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GalNAc-T13
  • Links
    NCBI Gene ID: 114805
    neXtProt AC: NX_Q8IUC8

  • Chr Location
    2q23.3-q24.1; chr2:153871898-154453977 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Gene trapped
    1
  • Targeted
    1
  • Genomic Mutations
    1 involving Galnt13
  • Incidental Mutations
Galnt13 is expressed exclusively in neuronal cells. Conditional animals can be used with cre-expressing strains to produce total or tissue-specific deletion of this locus.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015443 VEGA Gene Model | MGI Sequence Detail 681993 C57BL/6J ±  kb
transcript OTTMUST00000036658 VEGA | MGI Sequence Detail 7639 Not Applicable  
polypeptide OTTMUSP00000016451 VEGA | MGI Sequence Detail 592 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    3056 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
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  • All nucleic 16
    cDNA 16

    Microarray probesets 2
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:67674 Hennet T, et al., T-cell-specific deletion of a polypeptide N-acetylgalactosaminyl-transferase gene by site-directed recombination. Proc Natl Acad Sci U S A. 1995 Dec 19;92(26):12070-4
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory