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Galnt13
Gene Detail
 Symbol
Name
ID
Galnt13
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13
MGI:2139447
Synonyms pp-GalNAc-T13
Feature Type protein coding gene
Genetic Map
Chromosome 2
30.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr2:54436317-55118309 bp, + strand
From VEGA annotation of GRCm38

  681993 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:62167  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Galnt13

Human
homologs
Human Homolog GALNT13, polypeptide N-acetylgalactosaminyltransferase 13
NCBI Gene ID 114805
neXtProt AC  NX_Q8IUC8
Human Synonyms  GalNAc-T13, H_NH0187G20.1, WUGSC:H_NH0187G20.1
Human Chr (Location)  2q24.1; chr2:153732809-154453977 (+)  GRCh38
Alleles
and
phenotypes
All alleles(2) : Gene trapped(1) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Galnt13 is expressed exclusively in neuronal cells. Conditional animals can be used with cre-expressing strains to produce total or tissue-specific deletion of this locus.
 
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process protein O-linked glycosylation
Component Golgi apparatus, integral component of membrane, ...
Function metal ion binding, polypeptide N-acetylgalactosaminyltransferase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)    Images (3)
Theiler Stages: 22
Assay TypeResults
RNA in situ 94
cDNA source data(16)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(16) cDNA(16)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000015443 (Evidence)
Ensembl Gene ModelENSMUSG00000060988 (Evidence)
Entrez Gene271786 (Evidence)
UniGene330227
DFCITC1587569, TC1598935, TC1608513
DoTSDT.101366579, DT.101735465, DT.91336231, DT.94267705
NIA Mouse Gene IndexU001780
EC2.4.1.41
Consensus CDS ProjectCCDS16041.1
International Mouse Knockout Project StatusGalnt13
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015443 VEGA Gene Model | MGI Sequence Detail 681993 C57BL/6J ±  kb
transcript OTTMUST00000036658 VEGA | MGI Sequence Detail 7639 Not Applicable 
polypeptide OTTMUSP00000016451 VEGA | MGI Sequence Detail 592 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(17) UniProt(3)
Polymorphisms SNPs within 2kb(3187 from dbSNP Build 137)    SNPs within 2kb including multiple locations(3325)
Protein-related
information
ResourceIDDescription
InterPro IPR001173 Glycosyl transferase, family 2
InterPro IPR000772 Ricin B lectin domain
Protein Ontology PR:000007822 polypeptide N-acetylgalactosaminyltransferase 13
References (Earliest) J:67674 Hennet T, et al., T-cell-specific deletion of a polypeptide N-acetylgalactosaminyl-transferase gene by site-directed recombination. Proc Natl Acad Sci U S A. 1995 Dec 19;92(26):12070-4
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory