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Pcdhb12 Gene Detail
Summary
  • Symbol
    Pcdhb12
  • Name
    protocadherin beta 12
  • Synonyms
    Pcdh3, Pcdhb5F, PcdhbL
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136747
    NCBI Gene: 93883
  • Member of
    Pcdhb cluster
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37435621-37438654 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.49 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136747
protein coding gene Chr18:37435621-37438654 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024320
protein coding gene Chr18:35828417-35831450 (+)
A/J MGP_AJ_G0024288
protein coding gene Chr18:34608654-34611904 (+)
AKR/J MGP_AKRJ_G0024256
protein coding gene Chr18:35559863-35562896 (+)
BALB/cJ MGP_BALBcJ_G0024287
protein coding gene Chr18:34655235-34658268 (+)
C3H/HeJ MGP_C3HHeJ_G0024053
protein coding gene Chr18:35632329-35635362 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024729
protein coding gene Chr18:37128465-37131604 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022168
protein coding gene Chr18:34660507-34663545 (+)
CAST/EiJ MGP_CASTEiJ_G0023529
protein coding gene Chr18:35594115-35597148 (+)
CBA/J MGP_CBAJ_G0024023
protein coding gene Chr18:38217690-38220723 (+)
DBA/2J MGP_DBA2J_G0024153
protein coding gene Chr18:34205371-34208404 (+)
FVB/NJ MGP_FVBNJ_G0024119
protein coding gene Chr18:33929536-33934723 (+)
LP/J MGP_LPJ_G0024237
protein coding gene Chr18:35910988-35914021 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024150
protein coding gene Chr18:39496311-39499916 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024778
protein coding gene Chr18:35427426-35430459 (+)
PWK/PhJ MGP_PWKPhJ_G0023273
protein coding gene Chr18:34441905-34445212 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023078
protein coding gene Chr18:35665334-35668372 (+)
WSB/EiJ MGP_WSBEiJ_G0023591
protein coding gene Chr18:35319854-35323047 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 93883 NCBI Gene Model | MGI Sequence Detail 3034 C57BL/6J ±  kb
transcript NM_053137 RefSeq | MGI Sequence Detail 3034 C57BL/6  
polypeptide NP_444367 RefSeq | MGI Sequence Detail 789 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
Other
Accession IDs
less
MGD-MRK-27053, MGI:104690
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:29362 Sago H, et al., Cloning, expression, and chromosomal localization of a novel cadherin-related protein, protocadherin-3. Genomics. 1995 Oct 10;29(3):631-40
  • Latest
    J:269929 Elbert A, et al., CTCF Governs the Identity and Migration of MGE-Derived Cortical Interneurons. J Neurosci. 2019 Jan 2;39(1):177-192

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory