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Smco2 Gene Detail
Summary
  • Symbol
    Smco2
  • Name
    single-pass membrane protein with coiled-coil domains 2
  • Synonyms
    1700023A16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916621
    NCBI Gene: 69371
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:146850104-146871406 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 77.70 cM, cytoband G3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    376 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916621
protein coding gene Chr6:146850086-146871406 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031492
protein coding gene Chr6:151881491-151909137 (+)
A/J MGP_AJ_G0031467
protein coding gene Chr6:145859379-145881790 (+)
AKR/J MGP_AKRJ_G0031395
protein coding gene Chr6:150197906-150220534 (+)
BALB/cJ MGP_BALBcJ_G0031475
protein coding gene Chr6:145611740-145640496 (+)
C3H/HeJ MGP_C3HHeJ_G0031196
protein coding gene Chr6:150247506-150269134 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031936
protein coding gene Chr6:155926974-155949430 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029060
protein coding gene Chr6:144598369-144621150 (+)
CAST/EiJ MGP_CASTEiJ_G0030565
protein coding gene Chr6:149886352-149908854 (+)
CBA/J MGP_CBAJ_G0031156
protein coding gene Chr6:161880619-161911426 (+)
DBA/2J MGP_DBA2J_G0031312
protein coding gene Chr6:144637917-144659483 (+)
FVB/NJ MGP_FVBNJ_G0031264
protein coding gene Chr6:143379732-143403103 (+)
LP/J MGP_LPJ_G0031398
protein coding gene Chr6:151961994-151987927 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031304
protein coding gene Chr6:165603201-165629996 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031969
protein coding gene Chr6:150019680-150042320 (+)
PWK/PhJ MGP_PWKPhJ_G0030291
protein coding gene Chr6:143161686-143183323 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030115
protein coding gene Chr6:148169514-148194396 (+)
WSB/EiJ MGP_WSBEiJ_G0030658
protein coding gene Chr6:150638496-150661573 (+)



Homology
more
  • Human Ortholog
    SMCO2, single-pass membrane protein with coiled-coil domains 2
  • Vertebrate Orthologs
    7
  • Human Ortholog
    SMCO2, single-pass membrane protein with coiled-coil domains 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C12orf70
  • Links
    NCBI Gene ID: 341346
    neXtProt AC: NX_A6NFE2
    UniProt: A6NFE2

  • Chr Location
    12p11.23; chr12:27446482-27506911 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000030292 Ensembl Gene Model | MGI Sequence Detail 21303 C57BL/6J ±  kb
transcript ENSMUST00000032433 Ensembl | MGI Sequence Detail 1276 Not Applicable  
polypeptide ENSMUSP00000032433 Ensembl | MGI Sequence Detail 347 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR026617 Transmembrane and coiled-coil domain-containing protein 2/5
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2

    Microarray probesets 3
References
more
  • Summaries
    All 26
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory