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Pigm Gene Detail
Summary
  • Symbol
    Pigm
  • Name
    phosphatidylinositol glycan anchor biosynthesis, class M
  • Synonyms
    4933437L05Rik, C920011G20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914806
    NCBI Gene: 67556
Location & Maps
more
  • Sequence Map
    Chr1:172376546-172384099 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      7554 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    PIGM, phosphatidylinositol glycan anchor biosynthesis class M
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PIGM, phosphatidylinositol glycan anchor biosynthesis class M
    Orthology source: HGNC, HomoloGene
  • Synonyms
    GPI-MT-I
  • Links
    NCBI Gene ID: 93183
    neXtProt AC: NX_Q9H3S5

  • Chr Location
    1q23.2; chr1:160027672-160031993 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 6274
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: PIGM
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with human PIGM associations

Human Disease Mouse Models
       Glycosylphosphatidylinositol Deficiency   OMIM: 610293
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Targeted
    2
  • Genomic Mutations
    2 involving Pigm
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050149 VEGA Gene Model | MGI Sequence Detail 7554 C57BL/6J ±  kb
transcript OTTMUST00000127497 VEGA | MGI Sequence Detail 7554 Not Applicable  
polypeptide OTTMUSP00000068764 VEGA | MGI Sequence Detail 423 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    98 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    Genomic 1
    cDNA 18

    Microarray probesets 7
Other
Accession IDs
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MGI:2138304, MGI:2138532, MGI:2443074
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/19/2016
MGI 6.03
The Jackson Laboratory