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Pigm Gene Detail
Summary
  • Symbol
    Pigm
  • Name
    phosphatidylinositol glycan anchor biosynthesis, class M
  • Synonyms
    4933437L05Rik, C920011G20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914806
    NCBI Gene: 67556
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:172376546-172384099 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 79.73 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    98 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914806
protein coding gene Chr1:172376531-172384099 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016787
protein coding gene Chr1:178238757-178246291 (+)
A/J MGP_AJ_G0016766
protein coding gene Chr1:170944148-170951705 (+)
AKR/J MGP_AKRJ_G0016732
protein coding gene Chr1:176108205-176115410 (+)
BALB/cJ MGP_BALBcJ_G0016727
protein coding gene Chr1:171489393-171496877 (+)
C3H/HeJ MGP_C3HHeJ_G0016551
protein coding gene Chr1:176681559-176689044 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017189
protein coding gene Chr1:184156448-184164001 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014895
protein coding gene Chr1:162646570-162654157 (+)
CAST/EiJ MGP_CASTEiJ_G0016131
protein coding gene Chr1:176055992-176063497 (+)
CBA/J MGP_CBAJ_G0016525
protein coding gene Chr1:190697403-190707259 (+)
DBA/2J MGP_DBA2J_G0016632
protein coding gene Chr1:169879611-169887122 (+)
FVB/NJ MGP_FVBNJ_G0016629
protein coding gene Chr1:168135288-168142799 (+)
LP/J MGP_LPJ_G0016703
protein coding gene Chr1:179328906-179336401 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016656
protein coding gene Chr1:197942108-197949665 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017225
protein coding gene Chr1:175977435-175984922 (+)
PWK/PhJ MGP_PWKPhJ_G0015917
protein coding gene Chr1:169258256-169265927 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015699
protein coding gene Chr1:174927114-174934651 (+)
WSB/EiJ MGP_WSBEiJ_G0016193
protein coding gene Chr1:176135872-176143368 (+)



Homology
more
  • Human Ortholog
    PIGM, phosphatidylinositol glycan anchor biosynthesis class M
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PIGM, phosphatidylinositol glycan anchor biosynthesis class M
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GPI-MT-I
  • Links
    NCBI Gene ID: 93183
    neXtProt AC: NX_Q9H3S5
    UniProt: Q9H3S5

  • Chr Location
    1q23.2; chr1:160027672-160031993 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 6274
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PIGM
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000050229 Ensembl Gene Model | MGI Sequence Detail 7554 C57BL/6J ±  kb
transcript ENSMUST00000052455 Ensembl | MGI Sequence Detail 7554 Not Applicable  
polypeptide ENSMUSP00000052838 Ensembl | MGI Sequence Detail 423 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    Genomic 2
    cDNA 19

    Microarray probesets 7
Other
Accession IDs
less
MGI:2138304, MGI:2138532, MGI:2443074
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory