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Sall3
Gene Detail
 Symbol
Name
ID
Sall3
sal-like 3 (Drosophila)
MGI:109295
Synonyms B130022O04Rik, Msal, Msal-1, Salt, Spalt
Feature Type protein coding gene
Genetic Map
Chromosome 18
54.11 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:80966376-80986578 bp, - strand
From Ensembl annotation of GRCm38

  20203 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:18142  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 chicken; 1 zebrafish

Gene Tree: Sall3

Human
homologs
Human Homolog SALL3, spalt-like transcription factor 3
NCBI Gene ID 27164
neXtProt AC  NX_Q9BXA9
Human Synonyms  ZNF796
Human Chr (Location)  18q23; chr18:78980275-78998969 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(3) : Gene trapped(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous null mice display neonatal lethality with an impaired suckling ability, truncated soft palate, small epiglottis, and abnormal cranial nerve morphology.
 
Interactions
Sall3 interacts with 383 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process forelimb morphogenesis, hindlimb morphogenesis, ...
Component nucleus
Function DNA binding, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (22 records)
Data Summary: Results (276)    Tissues (115)    Images (48)
Theiler Stages: 2, 3, 4, 5, 11, 12, 15, 16, 17, 19, 20, 21, 22, 23, 24, 26, 28
Assay TypeResults
RNA in situ 261
RT-PCR 15
cDNA source data(37)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(41) Genomic(1) cDNA(39) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene ModelENSMUSG00000024565 (Evidence)
Entrez Gene20689 (Evidence)
UniGene215917
DFCITC1584615, TC1605262
DoTSDT.101371904, DT.60100212
NIA Mouse Gene IndexU038616
Consensus CDS ProjectCCDS29371.1
International Mouse Knockout Project StatusSall3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000024565 Ensembl Gene Model | MGI Sequence Detail 20203 C57BL/6J ±  kb
transcript ENSMUST00000057950 Ensembl | MGI Sequence Detail 6886 Not Applicable 
polypeptide ENSMUSP00000056967 Ensembl | MGI Sequence Detail 1248 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(4) UniProt(1)
Polymorphisms SNPs within 2kb(71 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Protein Ontology PR:000014438 Sal-like protein 3
References (Earliest) J:33754 Ott T, et al., The mouse homolog of the region specific homeotic gene spalt of Drosophila is expressed in the developing nervous system and in mesoderm-derived structures. Mech Dev. 1996 May;56(1-2):117-28
(Latest) J:196218 Wang B, et al., Loss of Gsx1 and Gsx2 function rescues distinct phenotypes in Dlx1/2 mutants. J Comp Neurol. 2013 May 1;521(7):1561-84
All references(50)
Other
accession IDs
MGD-MRK-36133, MGD-MRK-38340, MGI:2442452

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory