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Epyc
Gene Detail
 Symbol
Name
ID
Epyc
epiphycan
MGI:107942
Synonyms Dspg3, epiphycan, PG-Lb, SLRR3B
Feature Type protein coding gene
Genetic Map
Chromosome 10
50.35 cM, cytoband C2-C3
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr10:97644068-97682454 bp, + strand
From VEGA annotation of GRCm38

  38387 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3634  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Protein SuperFamily: osteoinductive factor precursor
Gene Tree: Epyc

Human
homologs
Human Homolog EPYC, epiphycan
NCBI Gene ID 1833
neXtProt AC  NX_Q99645
Human Synonyms  DSPG3, Pg-Lb, PGLB, SLRR3B
Human Chr (Location)  12q21; chr12:90963679-91005026 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Epyc interacts with 192 markers (Mir1a-1, Mir1a-2, Mir15a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Component extracellular region, proteinaceous extracellular matrix
External Resources: FuncBase
Expression
Literature Summary: (8 records)
Data Summary: Results (204)    Tissues (57)    Images (39)
Theiler Stages: 19, 22, 23, 24, 28
Assay TypeResults
RNA in situ 204
cDNA source data(37)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(41) Genomic(4) cDNA(37)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000024039 (Evidence)
Ensembl Gene ModelENSMUSG00000019936 (Evidence)
Entrez Gene13516 (Evidence)
UniGene148886
DFCITC1578872
NIA Mouse Gene IndexU011939
Consensus CDS ProjectCCDS24143.1
International Mouse Knockout Project StatusEpyc
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000024039 VEGA Gene Model | MGI Sequence Detail 38387 C57BL/6J ±  kb
transcript OTTMUST00000058776 VEGA | MGI Sequence Detail 2539 Not Applicable 
polypeptide OTTMUSP00000028520 VEGA | MGI Sequence Detail 322 Not Applicable 

For the selected sequences
All sequences(28) RefSeq(4) UniProt(3)
Polymorphisms RFLP(1) : SNPs within 2kb(250 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027217 Epiphycan
InterPro IPR001611 Leucine-rich repeat
InterPro IPR000372 Leucine-rich repeat-containing N-terminal
Protein Ontology PR:000007153 epiphycan
References (Earliest) J:35562 Kurita K, et al., Occurrence of PG-Lb, a leucine-rich small chondroitin/dermatan sulphate proteoglycan in mammalian epiphyseal cartilage: molecular cloning and sequence analysis of the mouse cDNA. Biochem J. 1996 Sep 15;318(Pt 3):909-14
(Latest) J:199664 Huang H, et al., Specific requirement of Gli transcription factors in Hedgehog-mediated intestinal development. J Biol Chem. 2013 Jun 14;288(24):17589-96
All references(36)
Other
accession IDs
MGD-MRK-36522

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory