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Rora
Gene Detail
 Symbol
Name
ID
Rora
RAR-related orphan receptor alpha
MGI:104661
Synonyms 9530021D13Rik, Nr1f1, tmgc26
Feature Type protein coding gene
Genetic Map
Chromosome 9
37.45 cM
Detailed Genetic Map ± 1 cM


Mapping data(24)
Sequence Map
Chr9:68653786-69388246 bp, + strand
From VEGA annotation of GRCm38

  734461 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56594  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Rora

Human
homologs
Human Homolog RORA, RAR-related orphan receptor A
NCBI Gene ID 6095
neXtProt AC  NX_P35398
Human Synonyms  NR1F1, ROR1, ROR2, ROR3, RZRA, RZR-ALPHA
Human Chr (Location)  15q22.2; chr15:60488284-61229303 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Chemically induced (ENU)(2) Gene trapped(3) Spontaneous(1) Targeted(7)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygotes for null mutations exhibit ataxia, cerebellar dysgenesis, impaired Purkinje and granule cell development, olfactory defects, hypoalphalipoproteinemia, and death around 4 weeks. Heterozygotes show slow Purkinje cell dedritic atrophy and loss.
 
Interactions
Rora interacts with 588 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (60 annotations)
Process angiogenesis, cellular response to hypoxia, ...
Component nucleus
Function beta-catenin binding, direct ligand regulated sequence-specific DNA binding transcription factor activity, ...
External Resources: FuncBase
Expression
Literature Summary: (43 records)
Data Summary: Results (521)    Tissues (292)    Images (86)
Theiler Stages: 2, 3, 4, 5, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28
Assay TypeResults
Immunohistochemistry 3
RNA in situ 452
Northern blot 11
RT-PCR 55
cDNA source data(31)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(48) Genomic(11) cDNA(31) Primer pair(4) Other(2)
Microarray probesets(11)
Other database
links
VEGA Gene ModelOTTMUSG00000023055 (Evidence)
Ensembl Gene ModelENSMUSG00000032238 (Evidence)
Entrez Gene19883 (Evidence)
DFCITC1577083, TC1586960, TC1592080, TC1681027, TC1693028, TC1728754
DoTSDT.40134876, DT.486288, DT.87039215, DT.99850366
NIA Mouse Gene IndexU043000, U094151
Consensus CDS ProjectCCDS23314.1, CCDS72268.1
International Mouse Knockout Project StatusRora
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023055 VEGA Gene Model | MGI Sequence Detail 734461 C57BL/6J ±  kb
transcript OTTMUST00000055460 VEGA | MGI Sequence Detail 10878 Not Applicable 
polypeptide OTTMUSP00000026559 VEGA | MGI Sequence Detail 523 Not Applicable 

For the selected sequences
All sequences(70) RefSeq(12) UniProt(5)
Polymorphisms RFLP(1) : SNPs within 2kb(5595 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008946 Nuclear hormone receptor, ligand-binding
InterPro IPR000536 Nuclear hormone receptor, ligand-binding, core
InterPro IPR003079 Nuclear receptor ROR
InterPro IPR001723 Steroid hormone receptor
InterPro IPR013088 Zinc finger, NHR/GATA-type
InterPro IPR001628 Zinc finger, nuclear hormone receptor-type
Protein Ontology PR:000014163 nuclear receptor ROR-alpha
References (Earliest) J:13140 SIDMAN RL, et al., Staggerer, a new mutation in the mouse affecting the cerebellum. Science. 1962 Aug 24;137:610-2
(Latest) J:210240 Halim TY, et al., Group 2 innate lymphoid cells are critical for the initiation of adaptive T helper 2 cell-mediated allergic lung inflammation. Immunity. 2014 Mar 20;40(3):425-35
All references(242)
Other
accession IDs
MGD-MRK-14383, MGD-MRK-26101, MGI:2442931, MGI:2670426, MGI:3054678

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory