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Genes and Markers Query Form
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Search for genes and markers by name, feature type, location, GO terms, protein domains, etc.
   Specify sorting and output options below.
Gene/Marker
Gene/Marker Symbol/Name:

Examples: Pax* *Sox2* *os *Col2a1*
Feature type


Click to select one or more feature types.
If no boxes are checked, then all feature types are included.
Counts reflect total MGI Markers in each feature type category.

    all feature types (98,638)
        gene (49,606)
            protein coding gene (22,990)
            non-coding RNA gene (19,598)
                rRNA gene (407)
                tRNA gene (459)
                snRNA gene (1,467)
                snoRNA gene (1,610)
                miRNA gene (2,310)
                scRNA gene (4)
                lincRNA gene (8,976)
                SRP RNA gene (13)
                RNase P RNA gene (4)
                RNase MRP RNA gene (1)
                telomerase RNA gene (1)
                unclassified non-coding RNA gene (4,338)
 
            heritable phenotypic marker (2,601)
            gene segment (640)
            unclassified gene (3,677)
 
        other feature type (49,032)
            QTL (4,883)
            transgene (7,215)
            complex/cluster/region (320)
            cytogenetic marker (1,029)
                chromosomal deletion (203)
                insertion (22)
                chromosomal inversion (151)
                Robertsonian fusion (212)
                reciprocal chromosomal translocation (342)
                chromosomal translocation (12)
                chromosomal duplication (37)
                chromosomal transposition (2)
                unclassified cytogenetic marker (25)
 
            BAC/YAC end (887)
            other genome feature (1,449)
                retrotransposon (48)
                telomere (47)
                minisatellite (155)
                unclassified other genome feature (581)
                endogenous retroviral region (610)
 
            DNA segment (20,362)
            pseudogenic region (12,887)
                pseudogene (12,348)
                pseudogenic gene segment (152)
                polymorphic pseudogene (5)
Genome location
Chromosome(s):
cM Position:
between
Example: 10.0-40.0
Genome Coordinates: from GRCm38
between
Examples:
125.618-125.622 Mbp
1-125618205 bp
125618205 - 999999999 bp
Marker range: use current symbols
between and
Example: between D19Mit32 and Tbx10
Gene Ontology
classifications
Gene Ontology (GO) classifications:
in
Hints for using AND, OR, AND NOT, quotes, partial word matching,...
Examples: vir* AND replication   gaba AND NOT “inhibitory synapse”   GO:0005794 OR GO:0005783
Browse Gene Ontology (GO)



Protein domains
InterPro Protein Domains:

Hints for using AND, OR, AND NOT, quotes, partial word matching,...
Examples: inhibitor* AND *peptide   GPCR AND NOT kinase   IPR000539 AND IPR001134   muscarinic OR nicotinic
Browse InterPro protein domains
Mouse phenotypes &
mouse models of
human disease
Phenotype / Disease:
Enter any combination of phenotype terms, disease terms, or IDs

Select Anatomical Systems Affected by Phenotypes
Browse Mammalian Phenotype Ontology (MP)
Browse Human Disease Vocabulary (OMIM)

Hints for using AND, OR, AND NOT, quotes, partial word matching,...
Examples: MP:0009754 AND MP:0009751   Alzheimer   168600 OR 168601   hippocamp*
  

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory