SETMAR Vertebrate HGNC

Vertebrate Homology

Source

Alliance of Genome Resources

Comparative GO Graph (mouse, human, rat, zebrafish)

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences select all deselect all Go
human	SETMAR	HGNC:10762 (HGNC) 6419 (Entrez Gene) 609834 (OMIM) SETMAR (Alliance of Genome Resources)	Chr3 p26.1	Chr3:4303332-4317265 (+) GRCh38		Q53H47 (UniProt \| EBI) NM_001320678 (RefSeq)
mouse	Setmar	MGI:1921979 (MGI) 74729 (Entrez Gene) Gene Tree Setmar (Alliance of Genome Resources)	Chr6 49.71 cM	Chr6:108042006-108054083 (+) GRCm39		ENSMUSG00000034639 (Ensembl Gene Model) ENSMUSP00000048225 (Ensembl) ENSMUST00000049246 (Ensembl)
rat	Setmar	RGD:1565882 (Rat Genome Database) 500281 (Entrez Gene) Setmar (Alliance of Genome Resources)	Chr4 q41			Q5I0M0 (UniProt \| EBI) NM_001025048 (RefSeq)
zebrafish	setmar	ZDB-GENE-080204-61 (Zebrafish Model Organism Database) 564575 (Entrez Gene) setmar (Alliance of Genome Resources)	Chr11			NP_001107072 (RefSeq) NM_001113600 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
- human
- mouse
- rat
- zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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