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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
136493

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CASP4 HGNC:1505 (HGNC)
837 (Entrez Gene)
602664 (OMIM)
Chr11 q22.2-q22.3 Chr11:104942867-104968598 (-)
GRCh38
P49662 (UniProt | EBI)
NM_001225 (RefSeq)
mouse Casp4 MGI:107700 (MGI)
12363 (Entrez Gene)
Gene Tree
VISTA-Point
Chr9 2.46 cM Chr9:5308828-5336783 (+)
GRCm38
OTTMUSG00000033830 (VEGA)
OTTMUSP00000046015 (VEGA)
OTTMUST00000085221 (VEGA)
rat Casp4 114555 (Entrez Gene)
Chr8 q11 NP_446188 (RefSeq)
NM_053736 (RefSeq)
chimpanzee CASP4 451518 (Entrez Gene)
Chr11 XP_508729 (RefSeq)
rhesus macaque CASP4 704864 (Entrez Gene)
Chr14 NP_001247885 (RefSeq)
NM_001260956 (RefSeq)
cattle CASP4 338039 (Entrez Gene)
Chr15 O75601 (UniProt | EBI)
NM_176638 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory