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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
105435

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human STX4 HGNC:11439 (HGNC)
6810 (Entrez Gene)
186591 (OMIM)
Chr16 p11.2 Chr16:31033095-31040168 (+)
GRCh38
Q12846 (UniProt | EBI)
NM_004604 (RefSeq)
mouse Stx4a MGI:893577 (MGI)
20909 (Entrez Gene)
Gene Tree
VISTA-Point
Chr7 69.77 cM Chr7:127824294-127849019 (+)
GRCm38
OTTMUSG00000030969 (VEGA)
OTTMUSP00000040409 (VEGA)
OTTMUST00000076681 (VEGA)
rat Stx4 81803 (Entrez Gene)
Chr1 q36 Q08850 (UniProt | EBI)
NM_031125 (RefSeq)
chimpanzee STX4 454062 (Entrez Gene)
Chr16 XP_009428978 (RefSeq)
rhesus macaque LOC704880 704880 (Entrez Gene)
Chr20 XP_001095454 (RefSeq)
cattle STX4 508675 (Entrez Gene)
Chr25 Q3SWZ3 (UniProt | EBI)
NM_001035064 (RefSeq)
dog STX4 489919 (Entrez Gene)
Chr6 XP_547039 (RefSeq)
zebrafish stx4 323735 (Entrez Gene)
Chr12 NP_956515 (RefSeq)
NM_200221 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory