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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
7934

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SHC1 HGNC:10840 (HGNC)
6464 (Entrez Gene)
600560 (OMIM)
Chr1 q21 Chr1:154962298-154974483 (-)
GRCh38
P29353 (UniProt | EBI)
NM_003029 (RefSeq)
mouse Shc1 MGI:98296 (MGI)
20416 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 39.11 cM Chr3:89418443-89430015 (+)
GRCm38
OTTMUSG00000022071 (VEGA)
OTTMUSP00000024848 (VEGA)
OTTMUST00000052404 (VEGA)
rat Shc1 85385 (Entrez Gene)
Chr2 q34 Q5M824 (UniProt | EBI)
NM_053517 (RefSeq)
chimpanzee SHC1 457351 (Entrez Gene)
Chr1 XP_513843 (RefSeq)
rhesus macaque SHC1 718982 (Entrez Gene)
Chr1 NP_001248416 (RefSeq)
NM_001261487 (RefSeq)
cattle SHC1 507196 (Entrez Gene)
Chr3 Q0IIE2 (UniProt | EBI)
NM_001075305 (RefSeq)
dog SHC1 490439 (Entrez Gene)
Chr7 XP_547561 (RefSeq)
chicken SHC1 395934 (Entrez Gene)
Chr25 NP_001280209 (RefSeq)
NM_001293280 (RefSeq)
western clawed frog LOC100492349 100492349 (Entrez Gene)
ChrUN XP_002942102 (RefSeq)
zebrafish shc1 323818 (Entrez Gene)
Chr16 XP_005169812 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory