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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
55616

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CTSD HGNC:2529 (HGNC)
1509 (Entrez Gene)
116840 (OMIM)
Chr11 p15.5 Chr11:1752752-1763992 (-)
GRCh38
Ceroid Lipofuscinosis, Neuronal, 10; CLN10
P07339 (UniProt | EBI)
NM_001909 (RefSeq)
mouse Ctsd MGI:88562 (MGI)
13033 (Entrez Gene)
Gene Tree
VISTA-Point
Chr7 87.93 cM Chr7:142371148-142388038 (-)
GRCm38
Ceroid Lipofuscinosis, Neuronal, 10; CLN10
OTTMUSG00000018797 (VEGA)
OTTMUSP00000020357 (VEGA)
OTTMUST00000045257 (VEGA)
rat Ctsd 171293 (Entrez Gene)
Chr1 q41 P24268 (UniProt | EBI)
NM_134334 (RefSeq)
rhesus macaque CTSD 703534 (Entrez Gene)
Chr14 NP_001247483 (RefSeq)
NM_001260554 (RefSeq)
cattle CTSD 282883 (Entrez Gene)
Chr29 P80209 (UniProt | EBI)
NM_001166521 (RefSeq)
dog CTSD 483662 (Entrez Gene)
Chr18 Q4LAL9 (UniProt | EBI)
NM_001025621 (RefSeq)
chicken CTSD 396090 (Entrez Gene)
Chr5 Q05744 (UniProt | EBI)
NM_205177 (RefSeq)
zebrafish ctsd 65225 (Entrez Gene)
Chr18 NP_571785 (RefSeq)
NM_131710 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory