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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9806

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human POMGNT1 HGNC:19139 (HGNC)
55624 (Entrez Gene)
606822 (OMIM)
Chr1 p34.1 Chr1:46188681-46220305 (-)
GRCh38
Muscular Dystrophy-Dystroglycanopathy (congenital with Brain and Eye Anomalies), Type A, 3; MDDGA3
Muscular Dystrophy-Dystroglycanopathy (congenital with Mental Retardation), Type B, 3; MDDGB3
Muscular Dystrophy-Dystroglycanopathy (limb-Girdle), Type C, 3; MDDGC3
Q8WZA1 (UniProt | EBI)
NM_017739 (RefSeq)
mouse Pomgnt1 MGI:1915523 (MGI)
68273 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 53.1 cM Chr4:116123840-116159849 (+)
GRCm38
Muscular Dystrophy-Dystroglycanopathy (congenital with Brain and Eye Anomalies), Type A, 3; MDDGA3
OTTMUSG00000009309 (VEGA)
OTTMUSP00000036414 (VEGA)
OTTMUST00000071171 (VEGA)
rat Pomgnt1 362567 (Entrez Gene)
Chr5 q36 Q5XIN7 (UniProt | EBI)
NM_001007747 (RefSeq)
cattle POMGNT1 506551 (Entrez Gene)
Chr3 Q5EAB6 (UniProt | EBI)
NM_001024485 (RefSeq)
dog POMGNT1 482511 (Entrez Gene)
Chr15 XP_861245 (RefSeq)
chicken POMGNT1 429097 (Entrez Gene)
Chr8 XP_426653 (RefSeq)
western clawed frog pomgnt1 100158594 (Entrez Gene)
ChrUN NP_001121493 (RefSeq)
NM_001128021 (RefSeq)
zebrafish pomgnt1 571876 (Entrez Gene)
Chr6 NP_001036152 (RefSeq)
NM_001042687 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory