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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9620

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CLDN1 HGNC:2032 (HGNC)
9076 (Entrez Gene)
603718 (OMIM)
Chr3 q28-q29 Chr3:190305701-190322446 (-)
GRCh38
Ichthyosis, Leukocyte Vacuoles, Alopecia, and Sclerosing Cholangitis
O95832 (UniProt | EBI)
NM_021101 (RefSeq)
mouse Cldn1 MGI:1276109 (MGI)
12737 (Entrez Gene)
Gene Tree
VISTA-Point
Chr16 18.0 cM Chr16:26356642-26371841 (-)
GRCm38
OTTMUSG00000022624 (VEGA)
OTTMUSP00000025830 (VEGA)
OTTMUST00000054195 (VEGA)
rat Cldn1 65129 (Entrez Gene)
Chr11 q22 P56745 (UniProt | EBI)
NM_031699 (RefSeq)
chimpanzee CLDN1 460934 (Entrez Gene)
Chr3 XP_516949 (RefSeq)
rhesus macaque CLDN1 704330 (Entrez Gene)
Chr2 NP_001180898 (RefSeq)
NM_001193969 (RefSeq)
cattle CLDN1 414922 (Entrez Gene)
Chr1 Q6L708 (UniProt | EBI)
NM_001001854 (RefSeq)
dog CLDN1 608207 (Entrez Gene)
Chr34 XP_850248 (RefSeq)
chicken CLDN1 424910 (Entrez Gene)
Chr9 NP_001013629 (RefSeq)
NM_001013611 (RefSeq)
western clawed frog cldn1 548421 (Entrez Gene)
ChrUN NP_001015704 (RefSeq)
NM_001015704 (RefSeq)
zebrafish cldn1 81590 (Entrez Gene)
Chr2 NP_571845 (RefSeq)
NM_131770 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory