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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CLDN1 HGNC:2032 (HGNC)
9076 (Entrez Gene)
603718 (OMIM)
CLDN1 (MyGene.info)
HGNC homology
Chr3 q28 Chr3:190305701-190322446 (-)
O95832 (UniProt | EBI)
NM_021101 (RefSeq)
mouse Cldn1 MGI:1276109 (MGI)
12737 (Entrez Gene)
Gene Tree
HGNC homology
Chr16 18.0 cM Chr16:26356642-26371841 (-)
OTTMUSG00000022624 (VEGA)
OTTMUSP00000025830 (VEGA)
OTTMUST00000054195 (VEGA)
rat Cldn1 65129 (Entrez Gene)
Chr11 q22 P56745 (UniProt | EBI)
NM_031699 (RefSeq)
chimpanzee CLDN1 460934 (Entrez Gene)
Chr3 XP_516949 (RefSeq)
cattle CLDN1 414922 (Entrez Gene)
Chr1 Q6L708 (UniProt | EBI)
NM_001001854 (RefSeq)
dog CLDN1 608207 (Entrez Gene)
Chr34 XP_850248 (RefSeq)
chicken CLDN1 424910 (Entrez Gene)
Chr9 NP_001013629 (RefSeq)
NM_001013611 (RefSeq)
zebrafish cldn1 81590 (Entrez Gene)
Chr2 NP_571845 (RefSeq)
NM_131770 (RefSeq)
frog, western clawed cldn1 548421 (Entrez Gene)
Chr5 NP_001015704 (RefSeq)
NM_001015704 (RefSeq)
macaque, rhesus CLDN1 704330 (Entrez Gene)
Chr2 NP_001180898 (RefSeq)
NM_001193969 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.11
The Jackson Laboratory