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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
954

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CD40 HGNC:11919 (HGNC)
958 (Entrez Gene)
109535 (OMIM)
Chr20 q12-q13.2 Chr20:46118260-46129745 (+)
GRCh38
Immunodeficiency with Hyper-Igm, Type 3; HIGM3
P25942 (UniProt | EBI)
NM_001250 (RefSeq)
mouse Cd40 MGI:88336 (MGI)
21939 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 85.38 cM Chr2:165055627-165072948 (+)
GRCm38
OTTMUSG00000016424 (VEGA)
OTTMUSP00000017667 (VEGA)
OTTMUST00000039545 (VEGA)
rat Cd40 171369 (Entrez Gene)
Chr3 q42 NP_599187 (RefSeq)
NM_134360 (RefSeq)
chimpanzee CD40 100615583 (Entrez Gene)
Chr20 XP_003317038 (RefSeq)
rhesus macaque CD40 707749 (Entrez Gene)
Chr10 NP_001252791 (RefSeq)
NM_001265862 (RefSeq)
cattle CD40 286849 (Entrez Gene)
Chr13 Q28203 (UniProt | EBI)
NM_001105611 (RefSeq)
dog CD40 403469 (Entrez Gene)
Chr24 Q7YRL5 (UniProt | EBI)
NM_001002982 (RefSeq)
chicken CD40 395385 (Entrez Gene)
Chr20 NP_989996 (RefSeq)
NM_204665 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/15/2014
MGI 5.17
The Jackson Laboratory