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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9302

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human ATL1 HGNC:11231 (HGNC)
51062 (Entrez Gene)
606439 (OMIM)
Chr14 q22.1 Chr14:50533082-50633068 (+)
GRCh38
Neuropathy, Hereditary Sensory, Type ID; HSN1D
Spastic Paraplegia 3, Autosomal Dominant; SPG3A
Q8WXF7 (UniProt | EBI)
NM_015915 (RefSeq)
mouse Atl1 MGI:1921241 (MGI)
73991 (Entrez Gene)
Gene Tree
VISTA-Point
Chr12 28.94 cM Chr12:69893105-69964085 (+)
GRCm38
73991 (NCBI Gene Model)
Q8BH66 (UniProt | EBI)
NM_178628 (RefSeq)
rat Atl1 362750 (Entrez Gene)
Chr6 q24 Q6PST4 (UniProt | EBI)
NM_001009831 (RefSeq)
chimpanzee ATL1 467452 (Entrez Gene)
Chr14 XP_001155724 (RefSeq)
rhesus macaque ATL1 706313 (Entrez Gene)
Chr7 NP_001244422 (RefSeq)
NM_001257493 (RefSeq)
cattle ATL1 535424 (Entrez Gene)
Chr10 Q58D72 (UniProt | EBI)
NM_001034631 (RefSeq)
dog ATL1 480318 (Entrez Gene)
Chr8 XP_537440 (RefSeq)
chicken ATL1 423577 (Entrez Gene)
Chr5 XP_421466 (RefSeq)
zebrafish atl1 571909 (Entrez Gene)
Chr13 NP_001139172 (RefSeq)
NM_001145700 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory