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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9219

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LDLRAP1 HGNC:18640 (HGNC)
26119 (Entrez Gene)
605747 (OMIM)
Chr1 p36-p35 Chr1:25543580-25591211 (+)
GRCh38
Hypercholesterolemia, Autosomal Recessive; ARH
Q5SW96 (UniProt | EBI)
NM_015627 (RefSeq)
mouse Ldlrap1 MGI:2140175 (MGI)
100017 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 67.09 cM Chr4:134744735-134768024 (-)
GRCm38
Hypercholesterolemia, Autosomal Recessive; ARH
OTTMUSG00000011121 (VEGA)
OTTMUSP00000011915 (VEGA)
OTTMUST00000026035 (VEGA)
rat Ldlrap1 500564 (Entrez Gene)
Chr5 q36 NP_001102741 (RefSeq)
NM_001109271 (RefSeq)
chimpanzee LOC739347 739347 (Entrez Gene)
Chr3 XP_009444167 (RefSeq)
rhesus macaque LOC713032 713032 (Entrez Gene)
Chr1 XP_001107620 (RefSeq)
cattle LDLRAP1 511199 (Entrez Gene)
Chr2 NP_001077137 (RefSeq)
NM_001083668 (RefSeq)
dog LDLRAP1 612219 (Entrez Gene)
Chr2 XP_855049 (RefSeq)
chicken LDLRAP1 419589 (Entrez Gene)
Chr23 XP_417736 (RefSeq)
western clawed frog ldlrap1 549868 (Entrez Gene)
ChrUN NP_001017114 (RefSeq)
NM_001017114 (RefSeq)
zebrafish ldlrap1b 791153 (Entrez Gene)
Chr13 NP_001074104 (RefSeq)
NM_001080635 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory