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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9160

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SAMHD1 HGNC:15925 (HGNC)
25939 (Entrez Gene)
606754 (OMIM)
Chr20 pter-q12 Chr20:36890882-36951843 (-)
GRCh38
Aicardi-Goutieres Syndrome 5; AGS5
Chilblain Lupus 2; CHBL2
Q9Y3Z3 (UniProt | EBI)
NM_015474 (RefSeq)
mouse Samhd1 MGI:1927468 (MGI)
56045 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 78.0 cM Chr2:157097533-157135265 (-)
GRCm38
OTTMUSG00000016173 (VEGA)
OTTMUSP00000017309 (VEGA)
OTTMUST00000038703 (VEGA)
rat Samhd1 311580 (Entrez Gene)
Chr3 q42 NP_001178672 (RefSeq)
NM_001191743 (RefSeq)
chimpanzee SAMHD1 458223 (Entrez Gene)
Chr20 NP_001267439 (RefSeq)
NM_001280510 (RefSeq)
rhesus macaque SAMHD1 709060 (Entrez Gene)
Chr10 NP_001258571 (RefSeq)
NM_001271642 (RefSeq)
cattle SAMHD1 524683 (Entrez Gene)
Chr13 Q0VCA5 (UniProt | EBI)
NM_001075861 (RefSeq)
dog SAMHD1 485862 (Entrez Gene)
Chr24 XP_542986 (RefSeq)
chicken SAMHD1 419125 (Entrez Gene)
Chr20 Q5ZJL9 (UniProt | EBI)
NM_001030845 (RefSeq)
zebrafish samhd1 553453 (Entrez Gene)
Chr23 Q502K2 (UniProt | EBI)
NM_001159933 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory