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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9067

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human AGTPBP1 HGNC:17258 (HGNC)
23287 (Entrez Gene)
606830 (OMIM)
Chr9 q21.33 Chr9:85546539-85742029 (-)
GRCh38
Q9UPW5 (UniProt | EBI)
NM_015239 (RefSeq)
mouse Agtpbp1 MGI:2159437 (MGI)
67269 (Entrez Gene)
Gene Tree
VISTA-Point
Chr13 31.87 cM Chr13:59449537-59585227 (-)
GRCm38
Retinitis Pigmentosa; RP
OTTMUSG00000035354 (VEGA)
OTTMUSP00000049503 (VEGA)
OTTMUST00000090298 (VEGA)
rat Agtpbp1 290986 (Entrez Gene)
Chr17 p14 NP_001099570 (RefSeq)
NM_001106100 (RefSeq)
chimpanzee AGTPBP1 464558 (Entrez Gene)
Chr9 XP_001136417 (RefSeq)
rhesus macaque AGTPBP1 709949 (Entrez Gene)
Chr15 XP_001107755 (RefSeq)
cattle AGTPBP1 534958 (Entrez Gene)
Chr8 XP_001252537 (RefSeq)
dog AGTPBP1 484146 (Entrez Gene)
Chr1 XP_005615866 (RefSeq)
chicken AGTPBP1 427460 (Entrez Gene)
ChrZ E1C3P4 (UniProt | EBI)
western clawed frog agtpbp1 100135097 (Entrez Gene)
ChrUN A9JRL3 (UniProt | EBI)
NM_001113836 (RefSeq)
zebrafish agtpbp1 554164 (Entrez Gene)
Chr8 Q4U2V3 (UniProt | EBI)
NM_001024445 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory