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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
9024

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human NPHP4 HGNC:19104 (HGNC)
261734 (Entrez Gene)
607215 (OMIM)
Chr1 p36 Chr1:5862810-5992558 (-)
GRCh38
Nephronophthisis 4; NPHP4
Senior-Loken Syndrome 4; SLSN4
O75161 (UniProt | EBI)
NM_015102 (RefSeq)
mouse Nphp4 MGI:2384210 (MGI)
260305 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 83.14 cM Chr4:152476706-152563049 (+)
GRCm38
OTTMUSG00000010703 (VEGA)
OTTMUSP00000011441 (VEGA)
OTTMUST00000024971 (VEGA)
rat Nphp4 313749 (Entrez Gene)
Chr5 q36 NP_001032739 (RefSeq)
NM_001037650 (RefSeq)
chimpanzee NPHP4 457887 (Entrez Gene)
Chr1 XP_009446038 (RefSeq)
rhesus macaque NPHP4 720707 (Entrez Gene)
Chr1 XP_002802192 (RefSeq)
cattle NPHP4 519551 (Entrez Gene)
Chr16 XP_001787491 (RefSeq)
dog NPHP4 489625 (Entrez Gene)
Chr5 NP_001129260 (RefSeq)
NM_001135788 (RefSeq)
chicken NPHP4 419377 (Entrez Gene)
Chr21 XP_003642568 (RefSeq)
zebrafish nphp4 560234 (Entrez Gene)
Chr8 XP_005167009 (RefSeq)
NM_001130775 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory