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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
89034

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CSMD2 HGNC:19290 (HGNC)
114784 (Entrez Gene)
608398 (OMIM)
CSMD2 (MyGene.info)
HGNC homology
Chr1 p35.1 Chr1:33513999-34165842 (-)
GRCh38.p7
Q7Z408 (UniProt | EBI)
NM_001281956 (RefSeq)
mouse Csmd2 MGI:2386401 (MGI)
329942 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr4 61.65 cM Chr4:127987857-128567656 (+)
GRCm38
ENSMUSG00000028804 (Ensembl Gene Model)
ENSMUSP00000138958 (Ensembl)
ENSMUST00000184063 (Ensembl)
rat Csmd2 313040 (Entrez Gene)
Chr5 q36 XP_006225595 (RefSeq)
chimpanzee CSMD2 456732 (Entrez Gene)
Chr1 XP_016814235 (RefSeq)
cattle CSMD2 100139189 (Entrez Gene)
Chr3 XP_015322540 (RefSeq)
dog CSMD2 609494 (Entrez Gene)
Chr15 XP_022259284 (RefSeq)
chicken CSMD2 419640 (Entrez Gene)
Chr23 XP_015153311 (RefSeq)
zebrafish csmd2 565460 (Entrez Gene)
Chr19 XP_693833 (RefSeq)
frog, western clawed csmd2 100486627 (Entrez Gene)
Chr2 XP_017947315 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/15/2020
MGI 6.15
The Jackson Laboratory