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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VSX1 HGNC:12723 (HGNC)
30813 (Entrez Gene)
605020 (OMIM)
VSX1 (MyGene.info)
HGNC homology
Chr20 p11.21 Chr20:25069940-25082379 (-)
Q9NZR4 (UniProt | EBI)
NM_001256271 (RefSeq)
mouse Vsx1 MGI:1890816 (MGI)
114889 (Entrez Gene)
Gene Tree
HGNC homology
Chr2 74.74 cM Chr2:150680702-150689360 (-)
OTTMUSG00000015757 (VEGA)
OTTMUSP00000016771 (VEGA)
OTTMUST00000037425 (VEGA)
rat Vsx1 689704 (Entrez Gene)
Chr3 q41 NP_001103016 (RefSeq)
NM_001109546 (RefSeq)
chimpanzee VSX1 741063 (Entrez Gene)
Chr20 XP_003953744 (RefSeq)
cattle VSX1 286802 (Entrez Gene)
Chr13 Q9GMA3 (UniProt | EBI)
NM_174767 (RefSeq)
dog VSX1 608128 (Entrez Gene)
Chr23 XP_850138 (RefSeq)
chicken VSX1 395537 (Entrez Gene)
Chr3 Q9IAL2 (UniProt | EBI)
NM_204769 (RefSeq)
macaque, rhesus VSX1 715973 (Entrez Gene)
Chr10 XP_002798304 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.11
The Jackson Laboratory