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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
8558

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMARCAL1 HGNC:11102 (HGNC)
50485 (Entrez Gene)
606622 (OMIM)
Chr2 q35 Chr2:216412414-216483053 (+)
GRCh38
Immunoosseous Dysplasia, Schimke Type
Q9NZC9 (UniProt | EBI)
NM_014140 (RefSeq)
mouse Smarcal1 MGI:1859183 (MGI)
54380 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 36.72 cM Chr1:72583251-72633134 (+)
GRCm38
Immunoosseous Dysplasia, Schimke Type
OTTMUSG00000021499 (VEGA)
OTTMUSP00000023911 (VEGA)
OTTMUST00000050950 (VEGA)
rat Smarcal1 316477 (Entrez Gene)
Chr9 q33 B4F769 (UniProt | EBI)
NM_001108222 (RefSeq)
chimpanzee SMARCAL1 459930 (Entrez Gene)
Chr2B XP_001153008 (RefSeq)
rhesus macaque SMARCAL1 695741 (Entrez Gene)
Chr12 XP_001086469 (RefSeq)
cattle SMARCAL1 338072 (Entrez Gene)
Chr2 Q9TTA5 (UniProt | EBI)
NM_176666 (RefSeq)
dog SMARCAL1 478903 (Entrez Gene)
Chr37 XP_536062 (RefSeq)
chicken SMARCAL1 396031 (Entrez Gene)
Chr7 XP_422070 (RefSeq)
western clawed frog smarcal1 780385 (Entrez Gene)
ChrUN Q0P4U8 (UniProt | EBI)
NM_001079455 (RefSeq)
zebrafish smarcal1 560412 (Entrez Gene)
Chr9 B2ZFP3 (UniProt | EBI)
NM_001127466 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory