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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
84739

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SYNGAP1 HGNC:11497 (HGNC)
8831 (Entrez Gene)
603384 (OMIM)
Chr6 p21.3 Chr6:33420070-33453689 (+)
GRCh38
Mental Retardation, Autosomal Dominant 5; MRD5
Q96PV0 (UniProt | EBI)
NM_006772 (RefSeq)
mouse Syngap1 MGI:3039785 (MGI)
240057 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 13.6 cM Chr17:26941452-26970645 (+)
GRCm38
Schizophrenia; SCZD
240057 (NCBI Gene Model)
F6SEU4 (UniProt | EBI)
NM_001281491 (RefSeq)
rat Syngap1 192117 (Entrez Gene)
Chr20 p12 Q9QUH6 (UniProt | EBI)
NM_181092 (RefSeq)
chimpanzee SYNGAP1 746276 (Entrez Gene)
Chr6 XP_003311264 (RefSeq)
rhesus macaque SYNGAP1 717858 (Entrez Gene)
Chr4 XP_001109824 (RefSeq)
cattle SYNGAP1 790307 (Entrez Gene)
Chr23 NP_001192395 (RefSeq)
NM_001205466 (RefSeq)
dog SYNGAP1 481742 (Entrez Gene)
Chr12 XP_005627810 (RefSeq)
western clawed frog syngap1 100038210 (Entrez Gene)
ChrUN NP_001128288 (RefSeq)
NM_001134816 (RefSeq)
zebrafish si:dkey-246f6.1 100151149 (Entrez Gene)
Chr16 XP_009290916 (RefSeq)
si:dkeyp-24a7.8 100034485 (Entrez Gene)
Chr19 XP_003200549 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory