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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
8173

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LAMP5 HGNC:16097 (HGNC)
24141 (Entrez Gene)
614641 (OMIM)
HGNC homology
Chr20 p12.2 Chr20:9514358-9530524 (+)
GRCh38.p7
Q9UJQ1 (UniProt | EBI)
NM_012261 (RefSeq)
mouse Lamp5 MGI:1923411 (MGI)
76161 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 67.26 cM Chr2:136052239-136069917 (+)
GRCm38
ENSMUSG00000027270 (Ensembl Gene Model)
ENSMUSP00000061180 (Ensembl)
ENSMUST00000057503 (Ensembl)
rat Lamp5 362220 (Entrez Gene)
Chr3 q36 Q5PPI4 (UniProt | EBI)
NM_001014183 (RefSeq)
chimpanzee LAMP5 458094 (Entrez Gene)
Chr20 XP_514512 (RefSeq)
cattle LAMP5 513094 (Entrez Gene)
Chr13 A4FV27 (UniProt | EBI)
NM_001083418 (RefSeq)
dog LAMP5 608500 (Entrez Gene)
Chr24 XP_850634 (RefSeq)
chicken LAMP5 416732 (Entrez Gene)
Chr3 XP_015139017 (RefSeq)
frog, western clawed lamp5 100037871 (Entrez Gene)
Chr5 A4IGL3 (UniProt | EBI)
NM_001097312 (RefSeq)
macaque, rhesus LAMP5 718433 (Entrez Gene)
Chr10 NP_001181627 (RefSeq)
NM_001194698 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/04/2020
MGI 6.14
The Jackson Laboratory