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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
810

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SCN1B HGNC:10586 (HGNC)
6324 (Entrez Gene)
600235 (OMIM)
Chr19 q13.1 Chr19:35030688-35040449 (+)
GRCh38
Atrial Fibrillation, Familial, 13; ATFB13
Brugada Syndrome 5; BRGDA5
Generalized Epilepsy with Febrile Seizures Plus, Type 1; GEFSP1
Q07699 (UniProt | EBI)
NM_001037 (RefSeq)
mouse Scn1b MGI:98247 (MGI)
20266 (Entrez Gene)
Gene Tree
VISTA-Point
Chr7 19.3 cM Chr7:31116524-31126945 (-)
GRCm38
Generalized Epilepsy with Febrile Seizures Plus, Type 1; GEFSP1
OTTMUSG00000045672 (VEGA)
OTTMUSP00000066474 (VEGA)
OTTMUST00000119567 (VEGA)
rat Scn1b 29686 (Entrez Gene)
Chr1 q21 Q00954 (UniProt | EBI)
NM_017288 (RefSeq)
chimpanzee SCN1B 747705 (Entrez Gene)
Chr19 A5A6L6 (UniProt | EBI)
NM_001110821 (RefSeq)
rhesus macaque SCN1B 707134 (Entrez Gene)
Chr19 NP_001245096 (RefSeq)
NM_001258167 (RefSeq)
cattle SCN1B 618204 (Entrez Gene)
Chr18 Q17QN4 (UniProt | EBI)
NM_001076496 (RefSeq)
dog SCN1B 484584 (Entrez Gene)
Chr1 Q4PPC4 (UniProt | EBI)
NM_001025398 (RefSeq)
western clawed frog scn1b 101734970 (Entrez Gene)
ChrUN XP_004916468 (RefSeq)
zebrafish scn1ba 555423 (Entrez Gene)
Chr16 NP_001071007 (RefSeq)
NM_001077539 (RefSeq)
scn1bb 100005325 (Entrez Gene)
Chr19 NP_001121628 (RefSeq)
NM_001128156 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory