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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
79783

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SHOC1 HGNC:26535 (HGNC)
158401 (Entrez Gene)
618038 (OMIM)
HGNC homology
Chr9 q31.3 Chr9:111686175-111795949 (-)
GRCh38.p7
Q5VXU9 (UniProt | EBI)
NM_173521 (RefSeq)
mouse Shoc1 MGI:2140313 (MGI)
100155 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr4 32.36 cM Chr4:59041984-59113971 (-)
GRCm38
100155 (NCBI Gene Model)
A2ALV5 (UniProt | EBI)
NM_001370843 (RefSeq)
rat Shoc1 686050 (Entrez Gene)
Chr5 q24 XP_017458501 (RefSeq)
chimpanzee SHOC1 464659 (Entrez Gene)
Chr9 XP_016816914 (RefSeq)
cattle SHOC1 617568 (Entrez Gene)
Chr8 XP_015328169 (RefSeq)
dog SHOC1 100687399 (Entrez Gene)
Chr11 XP_022280645 (RefSeq)
chicken C9orf84 101747858 (Entrez Gene)
ChrZ XP_025000888 (RefSeq)
frog, western clawed LOC100487050 100487050 (Entrez Gene)
ChrUN
macaque, rhesus SHOC1 707991 (Entrez Gene)
Chr15 NP_001181234 (RefSeq)
NM_001194305 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory