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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
7964

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SYCP3 HGNC:18130 (HGNC)
50511 (Entrez Gene)
604759 (OMIM)
Chr12 q Chr12:101728648-101739689 (-)
GRCh38
Spermatogenic Failure 4; SPGF4
Q8IZU3 (UniProt | EBI)
NM_153694 (RefSeq)
mouse Sycp3 MGI:109542 (MGI)
20962 (Entrez Gene)
Gene Tree
VISTA-Point
Chr10 43.94 cM Chr10:88459569-88473236 (+)
GRCm38
Spermatogenic Failure 4; SPGF4
OTTMUSG00000023468 (VEGA)
OTTMUSP00000027498 (VEGA)
OTTMUST00000057079 (VEGA)
rat Sycp3 25561 (Entrez Gene)
Chr7 q13 Q63520 (UniProt | EBI)
NM_013041 (RefSeq)
chimpanzee SYCP3 452174 (Entrez Gene)
Chr12 XP_509310 (RefSeq)
rhesus macaque SYCP3 697075 (Entrez Gene)
Chr11 XP_001092064 (RefSeq)
cattle SYCP3 615896 (Entrez Gene)
Chr5 Q3T0E2 (UniProt | EBI)
NM_001040588 (RefSeq)
dog SYCP3 100684357 (Entrez Gene)
Chr15 XP_003432089 (RefSeq)
chicken SYCP3 418097 (Entrez Gene)
Chr1 XP_416330 (RefSeq)
western clawed frog sycp3 779673 (Entrez Gene)
ChrUN NP_001072226 (RefSeq)
NM_001078758 (RefSeq)
zebrafish sycp3 678602 (Entrez Gene)
Chr25 NP_001035440 (RefSeq)
NM_001040350 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory