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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
79498

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human KDM5C HGNC:11114 (HGNC)
8242 (Entrez Gene)
314690 (OMIM)
ChrX p11.22-p11.21 ChrX:53191321-53225422 (-)
GRCh38
Mental Retardation, X-Linked, Syndromic, Claes-Jensen Type; MRXSCJ
P41229 (UniProt | EBI)
NM_004187 (RefSeq)
mouse Kdm5c MGI:99781 (MGI)
20591 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 68.46 cM ChrX:152233020-152274535 (+)
GRCm38
OTTMUSG00000017219 (VEGA)
OTTMUSP00000018728 (VEGA)
OTTMUST00000041692 (VEGA)
rat Kdm5c 317432 (Entrez Gene)
ChrX q21 XP_001064297 (RefSeq)
rhesus macaque KDM5C 100270697 (Entrez Gene)
ChrX NP_001244296 (RefSeq)
NM_001257367 (RefSeq)
cattle KDM5C 281490 (Entrez Gene)
ChrX NP_776610 (RefSeq)
NM_174185 (RefSeq)
dog KDM5C 491894 (Entrez Gene)
ChrX Q38JA7 (UniProt | EBI)
NM_001048032 (RefSeq)
western clawed frog kdm5c 780176 (Entrez Gene)
ChrUN NP_001072719 (RefSeq)
NM_001079251 (RefSeq)
zebrafish kdm5c 553406 (Entrez Gene)
Chr8 NP_001116706 (RefSeq)
NM_001123234 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory