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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
77476

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human USH1C HGNC:12597 (HGNC)
10083 (Entrez Gene)
605242 (OMIM)
Chr11 p14.3 Chr11:17493895-17544416 (-)
GRCh38
Deafness, Autosomal Recessive 18a; DFNB18A
Usher Syndrome, Type I; USH1
Usher Syndrome, Type Ic; USH1C
Q9Y6N9 (UniProt | EBI)
NM_005709 (RefSeq)
mouse Ush1c MGI:1919338 (MGI)
72088 (Entrez Gene)
Gene Tree
VISTA-Point
Chr7 29.66 cM Chr7:46195350-46238503 (-)
GRCm38
Deafness, Autosomal Recessive 18a; DFNB18A
Usher Syndrome, Type Ic; USH1C
OTTMUSG00000025998 (VEGA)
OTTMUSP00000031809 (VEGA)
OTTMUST00000064135 (VEGA)
chimpanzee USH1C 749420 (Entrez Gene)
Chr11 XP_003951893 (RefSeq)
cattle USH1C 530709 (Entrez Gene)
Chr15 Q3MHQ0 (UniProt | EBI)
NM_001035382 (RefSeq)
dog USH1C 610850 (Entrez Gene)
Chr21 XP_005633777 (RefSeq)
chicken USH1C 423073 (Entrez Gene)
Chr5 XP_421006 (RefSeq)
zebrafish ush1c 564412 (Entrez Gene)
Chr25 NP_001035018 (RefSeq)
NM_001039929 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory