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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
7593

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VAX1 HGNC:12660 (HGNC)
11023 (Entrez Gene)
604294 (OMIM)
Chr10 q26.1 Chr10:117128521-117138301 (-)
GRCh38
Microphthalmia, Syndromic 11; MCOPS11
Q5SQQ9 (UniProt | EBI)
NM_199131 (RefSeq)
mouse Vax1 MGI:1277163 (MGI)
22326 (Entrez Gene)
Gene Tree
VISTA-Point
Chr19 54.61 cM Chr19:59166187-59170056 (-)
GRCm38
OTTMUSG00000037558 (VEGA)
OTTMUSP00000054141 (VEGA)
OTTMUST00000096822 (VEGA)
rat Vax1 64571 (Entrez Gene)
Chr1 q55 Q9JM00 (UniProt | EBI)
NM_022636 (RefSeq)
chimpanzee VAX1 740057 (Entrez Gene)
Chr10 XP_001151780 (RefSeq)
cattle VAX1 782056 (Entrez Gene)
Chr26 NP_001178071 (RefSeq)
NM_001191142 (RefSeq)
dog VAX1 486906 (Entrez Gene)
Chr28 XP_865035 (RefSeq)
chicken VAX1 395582 (Entrez Gene)
Chr6 Q9PVN2 (UniProt | EBI)
NM_204799 (RefSeq)
western clawed frog LOC100486982 100486982 (Entrez Gene)
ChrUN XP_002944042 (RefSeq)
zebrafish vax1 373870 (Entrez Gene)
Chr17 Q801E0 (UniProt | EBI)
NM_194410 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory