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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
7546

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SOX18 HGNC:11194 (HGNC)
54345 (Entrez Gene)
601618 (OMIM)
Chr20 q13.33 Chr20:64047726-64049626 (-)
GRCh38
Hypotrichosis-Lymphedema-Telangiectasia Syndrome; HLTS
P35713 (UniProt | EBI)
NM_018419 (RefSeq)
mouse Sox18 MGI:103559 (MGI)
20672 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 103.71 cM Chr2:181669836-181671640 (-)
GRCm38
Hypotrichosis-Lymphedema-Telangiectasia Syndrome; HLTS
OTTMUSG00000016810 (VEGA)
OTTMUSP00000018259 (VEGA)
OTTMUST00000040830 (VEGA)
rat Sox18 311723 (Entrez Gene)
Chr3 q43 NP_001019952 (RefSeq)
NM_001024781 (RefSeq)
rhesus macaque SOX18 694156 (Entrez Gene)
Chr10 XP_001083465 (RefSeq)
cattle SOX18 519439 (Entrez Gene)
Chr13 NP_001069257 (RefSeq)
NM_001075789 (RefSeq)
dog SOX18 485984 (Entrez Gene)
Chr24 XP_003433278 (RefSeq)
chicken SOX18 374200 (Entrez Gene)
Chr20 NP_989640 (RefSeq)
NM_204309 (RefSeq)
western clawed frog sox18 100170185 (Entrez Gene)
ChrUN B3DLD3 (UniProt | EBI)
NM_001129937 (RefSeq)
zebrafish sox18 797246 (Entrez Gene)
Chr23 XP_001337702 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory