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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
75093

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PCDHA1 HGNC:8663 (HGNC)
56147 (Entrez Gene)
606307 (OMIM)
Protocadherin alpha 1 (MyGene.info)
HGNC homology
Chr5 q31.3 Chr5:140786136-141012344 (+)
GRCh38.p7
Q9Y5I3 (UniProt | EBI)
NM_018900 (RefSeq)
mouse Pcdha1 MGI:2150982 (MGI)
116731 (Entrez Gene)
Gene Tree
VISTA-Point
Chr18 19.46 cM Chr18:36930285-37187657 (+)
GRCm38
116731 (NCBI Gene Model)
NP_473413 (RefSeq)
NM_054072 (RefSeq)
rat Pcdha1 393085 (Entrez Gene)
Chr18 p11 NP_955797 (RefSeq)
NM_199503 (RefSeq)
macaque, rhesus PCDHA1 698493 (Entrez Gene)
Chr6
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
03/19/2019
MGI 6.13
The Jackson Laboratory